BtaEX6023245 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032152 | TMPRSS6
Description
transmembrane protease, serine 6 [Source:HGNC Symbol;Acc:HGNC:16517]
Coordinates
chr5:75870208-75873470:-
Coord C1 exon
chr5:75873199-75873470
Coord A exon
chr5:75871066-75871202
Coord C2 exon
chr5:75870208-75870556
Length
137 bp
Sequences
Splice sites
3' ss Seq
CCCTCAATCCTGCCGGGCAGGCC
3' ss Score
6.86
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
CATGGCATCCCCAGCGCTGTGGACCGTGTTCCTGGGCAAAGTGTGGCAGAGCTCACGCTGGCCGGGAGAGGTGTCCTTCAAAGTGAGCCGCCTGCTCCTGCACCCATACCACGAGGAGGACAGCCACGACTACGACGTGGCCCTGCTGCAGCTTGACCACCCTGTGGTGCGCTCGGCTACTGTGCAGCCCATCTGCCTGCCTGCCCGCTCCCACTTTTTCGAGGCGGGCCTGCACTGCTGGATCACAGGCTGGGGTGCCCTGCGAGAAGGCG
Seq A exon
GCCCCACCAGCAACGGCCTGCAGAAGGTGGACGTGCAGCTGATCCCGCAGGACCTGTGCAGCGAGGCCTACCGCTACCAGGTGACACCCCGCATGCTGTGCGCCGGCTACCGCAACGGCAAGAAGGATGCCTGCCAG
Seq C2 exon
GGTGACTCAGGTGGCCCGCTGGTGTGCAAGGAGCCCAGTGGCCGTTGGTTCCTGGCAGGGCTGGTCAGCTGGGGTCTGGGCTGCGGCCGGCCCAACTATTTTGGCGTCTACACCCGCATCACTGGTGTGATAGGCTGGATCCAGCAGGTGCTGACTTGAGGAGCTGCCCCCCTGCAGAGCAGGGGCCTACTTTTTGGACTCAGAGAGCCCAGGGCACCCACCGGGGGGTTGGGAGCAAGTATTCTTCAGGCAGCAGGGCCTGGAGGGGACAGGAGGTGGTATTTCCTGTCCCCCAACCTGATGCCTGATATCAGCCTCAGTGAGGGTACGAGGGAGGTGGGCCATCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032152-'23-20,'23-19,24-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.6=100)
A:
PF0008921=Trypsin=FE(19.6=100)
C2:
PF0008921=Trypsin=PD(20.0=86.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTCCTTCAAAGTGAGCCG
R:
CAGGAACCAACGGCCACTG
Band lengths:
257-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]