MmuEX6054759 @ mm10
Exon Skipping
Gene
ENSMUSG00000016942 | Tmprss6
Description
transmembrane serine protease 6 [Source:MGI Symbol;Acc:MGI:1919003]
Coordinates
chr15:78439668-78442553:-
Coord C1 exon
chr15:78442282-78442553
Coord A exon
chr15:78440608-78440744
Coord C2 exon
chr15:78439668-78440372
Length
137 bp
Sequences
Splice sites
3' ss Seq
CCTCATTTTTGCCTCTGCAGGTC
3' ss Score
10.93
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CATGGCCTCCCCGAAGCTGTGGACCGTGTTCCTGGGAAAGATGCGGCAGAACTCGCGCTGGCCAGGCGAGGTGTCCTTCAAGGTGAGCCGTCTGTTCCTGCACCCGTACCACGAGGAGGACAGCCATGACTACGACGTGGCCCTGCTGCAGCTCGACCACCCCGTGGTGTACTCGGCCACTGTGCGCCCCGTCTGCCTGCCTGCCCGCTCCCACTTCTTTGAGCCAGGCCAGCACTGCTGGATCACAGGCTGGGGAGCCCAGCGAGAGGGTG
Seq A exon
GTCCGGTGAGCAACACCCTGCAGAAGGTGGACGTACAGCTGGTCCCTCAGGACCTCTGCAGTGAGGCCTACCGCTACCAGGTGTCCCCACGCATGCTCTGTGCTGGCTACCGCAAGGGCAAGAAAGATGCCTGCCAG
Seq C2 exon
GGTGACTCTGGAGGCCCACTGGTTTGCAGGGAGCCCAGTGGCCGCTGGTTCCTGGCAGGGTTGGTTAGCTGGGGCCTGGGCTGTGGCCGACCCAATTTCTTTGGCGTCTACACCCGTGTCACACGTGTGATCAACTGGATCCAGCAGGTGCTGACCTGAGGGCTGTTCTACAGAGCTGGACCTGCCTCCAGGCCAAGTTCAGGGTGTCCACCCAGCCAGGACACAAGTATTCTGGGGCAAGTGACCCTGCTAAGGCCTGTTTCCCTCAGGCCTACCCCAGTGACAGTACAGAGAAGGATGTCAGCTGGTGGTTAGGATGCCTCCTGAGGTCCAGGGGCCAGCCTCGGCTAGGTTTCACTTCTAACCCTTTCTTATTCTAGTCCTTTCCCCTCCCTGCTCCTACCACTGTTTTGGAGTGGGGTCTGGCGGCCATGACCTTGGCCTCCGGGTCTCTGTAGGAAAGAAAGAATCCTTCCCCTTGCAAAAGCCTCTTGGGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016942-'28-29,'28-27,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.6=100)
A:
PF0008921=Trypsin=FE(19.6=100)
C2:
PF0008921=Trypsin=PD(20.0=86.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCCATGACTACGACGTG
R:
AAGAAATTGGGTCGGCCACAG
Band lengths:
255-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types