BtaEX6058380 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008342 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr15:29001583-29004418:-
Coord C1 exon
chr15:29004320-29004418
Coord A exon
chr15:29001887-29002029
Coord C2 exon
chr15:29001583-29001735
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCCACCCCACCACACTGAAGAGA
3' ss Score
-0.94
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
CTCATGTCCACCCTGCCTGCCTCCCCATGCACGGACAGACCTTCGGCCTCAATGAGATCTGCTGGATCACAGGCTTTGGCAAGACCAAGGAGACAGATG
Seq A exon
AGAGGACTTCCCCTTTTCTCCGGGAGGTGCAGGTTAACCTCATTGATTTCAAGAAGTGCAATGACTACTTGGTCTACGACAGCTACCTTACCCCGAGGATGATGTGCGCGGGGGACCTGCGAGGAGGCAGAGACTCCTGCCAG
Seq C2 exon
GGAGACAGCGGGGGGCCTCTGGTCTGTGAGCAGAACGGCCGCTGGTACCTGGCAGGAGTCACCAGCTGGGGCACGGGCTGCGGCCAGAGGAACAAACCTGGCGTGTACACCAAGGTGACGGAAGTGCTCCCCTGGATATACAGCAAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008342-'12-13,'12-11,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.4=100)
A:
PF0008921=Trypsin=FE(20.5=100)
C2:
PF0008921=Trypsin=PD(19.7=88.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATGTCCACCCTGCCTG
R:
TGCTGTATATCCAGGGGAGCA
Band lengths:
244-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]