BtaEX0037521 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007325 | TPSB1
Description
TPSB1 protein; Tryptase alpha/beta 1; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A6QQ05]
Coordinates
chr25:995227-996276:+
Coord C1 exon
chr25:995227-995383
Coord A exon
chr25:995617-995780
Coord C2 exon
chr25:995855-996276
Length
164 bp
Sequences
Splice sites
3' ss Seq
CCTCTGCCCCCTCCCCCCAGGGC
3' ss Score
13.17
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGAAGTCCATGGCCCCTCATACTTCAGGGTGCAGCTGCGTGAGCAGCACCTGTATTACCAGGACCAGCTGCTGCCCATCAGCAGGATCATCCCCCACCCCAACTACTACAGCGTTGAGAACGGGGCGGACATCGCCCTGCTGGAGCTGGACGAGCCC
Seq A exon
GGCGCCTGCCGCCCCCATTCCCCCTGAAGCAGGTGAAGGTGCCCGTCGTGGAGAACAGTGTCTGTGACAGGAAGTACCACTCTGGCCTGTCCACAGGGGACAACGTACCCATAGTGCAGGAGGATAACTTGTGTGCTGGGGACAGCGGGAGGGACTCCTGCCAG
Seq C2 exon
GGCGACTCTGGAGGGCCCCTGGTCTGCAAGGTGAATGGCACCTGGCTGCAGGCGGGGGTGGTCAGCTGGGGCGATGGTTGCGCGAAGCCCAACCGGCCCGGCATCTACACCCGCGTCACCTCCTACCTGGACTGGATCCACCAGTACGTCCCCCAGGGGCCCTGAGCCTGGTCCCCAGGCCGCCCCCTGGGTCAGCGGAGGAGCTGGCCCCCTCTGTCCCCTCAGCGCTGCTTCCGGCCGAGGAGGAGACCTTCCCCCACCTTCCCTGGCCCCCTGCCCCAATGCCCACCCCCGATGACCCCCCTCCTGGCTGACCCCTCTCTGCTGACCCCTCCCTGCCCTGAACCCCTGCCCCAGCCCCCTCCCCACTCAGCTCAGGGCGCTGGCAGGGGCTGCTGACACTCATAAAAAGCATGGAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007325_CASSETTE2
Average complexity
S*
Mappability confidence:
50%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.164 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(37.6=100)
A:
PF0008921=Trypsin=FE(22.8=100)
C2:
PF0008921=Trypsin=PD(19.0=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATTACCAGGACCAGCTGCTG
R:
GGGACGTACTGGTGGATCCA
Band lengths:
258-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development