MmuEX6075962 @ mm10
Exon Skipping
Gene
ENSMUSG00000024173 | Tpsab1
Description
tryptase alpha/beta 1 [Source:MGI Symbol;Acc:MGI:96943]
Coordinates
chr17:25343245-25344916:-
Coord C1 exon
chr17:25344651-25344916
Coord A exon
chr17:25343656-25343819
Coord C2 exon
chr17:25343245-25343583
Length
164 bp
Sequences
Splice sites
3' ss Seq
GGTCTTTCTTTCACCTACAGTAA
3' ss Score
7.64
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
GGATGTTGCTGACCCCAACAAGGTCAGAGTACAGCTCCGTAAGCAGTACCTCTATTACCATGACCACCTGATGAATGTGAGCCAGATCATCACACACCCCGACTTCTACATCGTCCAGGATGGGGCAGACATTGCCCTGCTGAAACTCACAAACCCTGTGAACATTTCTGACTATGTCCACCCTGTCCCCCTACCTCCTGCCTCAGAGACCTTCCCCTCAGGAACGTTGTGCTGGGTGACAGGCTGGGGTAACATCGACAATGGTG
Seq A exon
TAAACCTGCCGCCACCATTTCCTTTGAAGGAGGTGCAAGTTCCCATTATAGAAAACCACCTTTGTGACTTGAAGTATCACAAAGGTCTCATCACAGGTGACAATGTCCACATTGTCCGAGATGACATGCTGTGTGCTGGGAATGAAGGACATGACTCCTGCCAG
Seq C2 exon
GGCGACTCCGGAGGACCTCTGGTCTGCAAGGTAGAAGACACCTGGCTGCAGGCAGGCGTGGTCAGCTGGGGTGAGGACTGCGCACAGCCCAACAGGCCTGGCATCTACACCCGGGTCACCTATTACTTGGACTGGATCCACCGCTATGTCCCCAAGGACTTCTGAGTCACATCCAGGATGACCTCCGTTCCTCCCAGCATGCTGCTTCCTGCCTGGGTGGCATCCCTGCCTTCCTCTCCTGCTCCCCATCCTGAGTCCCAATTCTTCTGCCTTCCACTCAAGTAGCTACACTGCGCAGGCGCCGCTCTCTGCTATGCCTCAATAAAATGCATTAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024173-'6-3,'6-2,9-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(37.6=100)
A:
PF0008921=Trypsin=FE(22.8=100)
C2:
PF0008921=Trypsin=PD(19.0=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTGCTGAAACTCACAAA
R:
GTGTAGATGCCAGGCCTGTTG
Band lengths:
244-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types