DreEX6018127 @ danRer10
Exon Skipping
Gene
ENSDARG00000004748 | zgc:100868
Description
zgc:100868 [Source:ZFIN;Acc:ZDB-GENE-040801-33]
Coordinates
chr3:39341695-39344863:-
Coord C1 exon
chr3:39344595-39344863
Coord A exon
chr3:39344357-39344502
Coord C2 exon
chr3:39341695-39341989
Length
146 bp
Sequences
Splice sites
3' ss Seq
CTGTTTCTTTTTTCTCTCAGTCA
3' ss Score
9.23
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CCCTTCGACGACTGGTCTACTTGTATATTTGGGCCTACAAAAACTAGCATCATTTGAATCATACTCGATGTCCAGTGCTGTCTCCAATATCATAAAACATCCAAACTACAATAGTGATACTGAAGACAATGACATCACTCTTCTGCAACTGGCCTCAACAGTGAGCTTTTCGAACTACATCAGACCTATCTGTCTGGCTGCATCCGACAGTACTTTCTTCAATGGAACTTTGGTCTGGATCACTGGATGGGGGAACACTGCCACAGGCG
Seq A exon
TCAGCCTACCTTCCCCGGGGACTCTACAAGAAGTGCAAGTGCCGATTGTTGGAAACAGGAAGTGTAATTGTCTTTATGGGGTCTCAAAAATCACAGACAATATGGTGTGTGCTGGACTATTGCAAGGGGGGAAAGACTCCTGTCAG
Seq C2 exon
GGTGACTCTGGTGGTCCAATGGTCAGCAAACAGGGCTCAGTTTGGATCCAGTCTGGAATTGTGAGTTTTGGTACAGGCTGTGCTCAACCAAACTTCCCTGGTGTGTATACCAGGGTGTCTAAATATCAGAGCTGGATCCAGCAGAGAATCACCACCACCCAGCCAGGCTTTGTCATGTACAATTCCAATGGTACTGATGGTGACCTGAGTGTAAACTGCCCTGGTCTCCCCACCATTCCCCCCACCACAGCTTCTACAACACAAACAACTACAATGTCAACTACGACTGTCGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004748-'5-5,'5-3,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.182
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(41.0=97.1)
A:
PF0008921=Trypsin=FE(29.8=100)
C2:
PF0008921=Trypsin=PD(28.0=45.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCTGTCTGGCTGCATCCGA
R:
GGTGGTGGTGATTCTCTGCTG
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]