RnoEX6046623 @ rn6
Exon Skipping
Gene
ENSRNOG00000024181 | Tpsab1
Description
tryptase alpha/beta 1 [Source:RGD Symbol;Acc:3066]
Coordinates
chr10:14701253-14703001:-
Coord C1 exon
chr10:14702736-14703001
Coord A exon
chr10:14701674-14701837
Coord C2 exon
chr10:14701253-14701602
Length
164 bp
Sequences
Splice sites
3' ss Seq
GGCCTTTCTCTCACCCACAGTAA
3' ss Score
8.83
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAATAAGGCTGACCCCAACAAGCTCAGGGTACAGCTTCGTAAGCAGTATCTCTATTATCATGACCACCTGCTGACCGTGAGCCAGATCATCTCACACCCTGACTTCTACATCGCCCAGGATGGGGCAGACATTGCCCTGCTGAAACTCACTAACCCTGTGAACATTACCAGCAATGTCCACACTGTCTCCCTGCCTCCCGCCTCAGAGACCTTCCCCTCAGGGACATTGTGCTGGGTGACAGGCTGGGGTAACATCAACAATGATG
Seq A exon
TAAGCCTGCCACCGCCATTTCCTTTGGAGGAGGTGCAAGTTCCCATTGTAGAAAACCGCCTCTGTGACTTGAAGTATCACAAAGGTCTCAACACAGGTGACAACGTCCACATTGTCCGTGACGACATGCTGTGTGCTGGGAATGAAGGACATGACTCCTGCCAG
Seq C2 exon
GGCGACTCCGGAGGACCTCTGGTCTGCAAGGTTGAAGATACCTGGCTGCAGGCAGGTGTTGTGAGCTGGGGTGAGGGCTGCGCACAGCCCAACAGGCCTGGCATCTACACTCGGGTCACCTATTACCTGGACTGGATCTACCGCTATGTCCCCAAGGACTTCTGAGTTGCATCCAGGGTGACCTCTGTTGTTTCCAACATGCTGCTTTCTGCCTCCCTGCTTCCCTGCTCCCCAGCCTGAGCCCCAACTCTGCTCTACCTGAGCCCCTGACCACTTGTGTCCCTCCCGCTCAGGTAGCCACACTGTACAGGCAGCCACTCTGCTATGGCTCAATAAAATGCATTAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024181-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(37.6=100)
A:
PF0008921=Trypsin=FE(22.8=100)
C2:
PF0008921=Trypsin=PD(19.0=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGAGACCTTCCCCTCAGG
R:
AACAACAGAGGTCACCCTGGA
Band lengths:
257-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]