GgaEX1046475 @ galGal4
Exon Skipping
Gene
ENSGALG00000004463 | PRSS56
Description
protease, serine, 56 [Source:HGNC Symbol;Acc:HGNC:39433]
Coordinates
chr9:15072571-15073442:+
Coord C1 exon
chr9:15072571-15072679
Coord A exon
chr9:15073044-15073186
Coord C2 exon
chr9:15073283-15073442
Length
143 bp
Sequences
Splice sites
3' ss Seq
ACTGGCACCTTGCCTGGCAGAGG
3' ss Score
6.28
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GAACCAGAACGAGTTGGCGTGGACGGTGGTGGTGGGCGACCACGAGCTGGGCAAGGCAGACCCCGGGGAGCGGGCAGTGCCCGTGCGGCGCATCGTGCCTCACCCCAAG
Seq A exon
AGGGGCCATCGGCCGAGGTGGTGATGGAAGCACAGGTGCCTCTGCTCAGCCAGGAGACGTGCCGGGCAGCCCTGGGCAGAGAGCTGCTCACCAGCACCATGTTCTGTGCCGGGTATCTGTCTGGGGGCATCGATTCCTGCCAG
Seq C2 exon
GGTGACTCGGGTGGTCCGCTGGTGTGCCAGGACCCCTCCTCGCACAGCTTTGTCCTCTATGGCATCACTTCGTGGGGTGATGGCTGCGGCGAGCGGGGCAAACCAGGTGTCTACACTCGCGTGGCTGCCTTTGCCGACTGGCTCAGCCTGCAGATGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004463_MULTIEX2-2/5=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.486 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(15.7=100)
A:
PF0008921=Trypsin=FE(20.4=100)
C2:
PF0008921=Trypsin=PD(20.4=87.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCAGAACGAGTTGGCGTG
R:
CCAGTCGGCAAAGGCAGC
Band lengths:
250-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]