GgaEX1046475 @ galGal3
Exon Skipping
Gene
ENSGALG00000004463 | F1NSE5_CHICK
Description
NA
Coordinates
chr9:16701816-16702500:+
Coord C1 exon
chr9:16701816-16701975
Coord A exon
chr9:16702102-16702244
Coord C2 exon
chr9:16702341-16702500
Length
143 bp
Sequences
Splice sites
3' ss Seq
ACTGGCACCTTGCCTGGCAGAGG
3' ss Score
6.28
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
TTCAACCCCAAGACGTTTCATGGGGATCTGGCGCTGCTGGAGCTGGCGGAGCCGCTGGCACCGTCGGGCACCGTGAGCCCCGTGTGCCTGCCCAGCGGTACCACCGAGCCCAGCCCCGGCACCCCCTGCCACATCGCGGGGTGGGGGTCCCTGTATGAAG
Seq A exon
AGGGGCCATCGGCCGAGGTGGTGATGGAAGCACAGGTGCCTCTGCTCAGCCAGGAGACGTGCCGGGCAGCCCTGGGCAGAGAGCTGCTCACCAGCACCATGTTCTGTGCCGGGTATCTGTCTGGGGGCATCGATTCCTGCCAG
Seq C2 exon
GGTGACTCGGGTGGTCCGCTGGTGTGCCAGGACCCCTCCTCGCACAGCTTTGTCCTCTATGGCATCACTTCGTGGGGTGATGGCTGCGGCGAGCGGGGCAAACCAGGTGTCTACACTCGCGTGGCTGCCTTTGCCGACTGGCTCAGCCTGCAGATGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004463-'2-3,'2-2,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.0=100)
A:
PF0008921=Trypsin=FE(20.4=100)
C2:
PF0008921=Trypsin=PD(20.4=87.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCCAAGACGTTTCATGGG
R:
CAGCCATCACCCCACGAAG
Band lengths:
243-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]