DreEX6028955 @ danRer10
Exon Skipping
Gene
ENSDARG00000053158 | prss56
Description
protease, serine, 56 [Source:ZFIN;Acc:ZDB-GENE-070912-579]
Coordinates
chr2:45204964-45206743:+
Coord C1 exon
chr2:45204964-45205120
Coord A exon
chr2:45205216-45205358
Coord C2 exon
chr2:45206584-45206743
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTATTTTTTTGTAGACG
3' ss Score
9.6
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
TTTAACCCAAAGACGTTCAATAATGACATTGCTCTGGTGGAGCTGAGCTCTCCGGTGATTCTGTCTGAACGGGTCACTCCTGTCTGTCTGCCCTCTGACTTGGATCCTCCGGCTGGCACACCCTGTTTAGTGGCCGGCTGGGGATCTTTGTATGAAG
Seq A exon
ACGGCCCATCTGCAGATGTGGTGATGGAGGCGAAGGTGCCCCTGTTGTCTCAAGCCACATGTCAAAGTGCATTGGGGAAAGAGCTGCTCACTAACACCATGTTCTGTGCTGGCTACCTGTCCGGGGGCATCGACTCATGCCAG
Seq C2 exon
GGGGATTCTGGAGGGCCGCTGATCTTCCAGGACCGTTTGTCAGGACGCTTTCAGCTGCTTGGCATCACCTCTTGGGGTGACGGCTGTGGGGAGAAGGGGAAGCCTGGCGTCTACACACGGGTCACTGCCTTCTCTGACTGGGTCCTGACAGAGATACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053158-'6-7,'6-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(36.6=100)
A:
PF0008921=Trypsin=FE(20.5=100)
C2:
PF0008921=Trypsin=PD(20.5=87.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGATTCTGTCTGAACGGG
R:
CCCAGTCAGAGAAGGCAGTGA
Band lengths:
247-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]