RnoEX6040747 @ rn6
Exon Skipping
Gene
ENSRNOG00000029865 | Prss56
Description
serine protease 56 [Source:RGD Symbol;Acc:1563955]
Coordinates
chr9:94281157-94282104:+
Coord C1 exon
chr9:94281157-94281316
Coord A exon
chr9:94281565-94281707
Coord C2 exon
chr9:94281942-94282104
Length
143 bp
Sequences
Splice sites
3' ss Seq
GCTTTCCTGCTTTCCTGTAGACG
3' ss Score
9.29
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
TTTGACCCGCAGACTTTTCACAATGACCTAGCGTTGGTACAGCTGTGGACGCCTGTGAACTCAGAGGGGCCTGCGCGCCCCATTTGCCTACCCGAGGGTTCTCGGGAGCCTCCTGCCGGCACTCCCTGCACCATCGCAGGCTGGGGGGCTCTCTTCGAAG
Seq A exon
ACGGGCCTGAGTCTGAGGCAGTGAGGGAGGCCCGCGTTCCGCTACTCAGTGCAGACACCTGTCAAAAGGCCCTGGGGCCTGGGCTGAGTCCCAGCACCATGCTCTGCGCTGGTTACCTGGCAGGGGGCATCGACTCATGCCAG
Seq C2 exon
GGTGACTCCGGGGGCCCTTTAACCTGTTCTGAGCCCGGCCCGCGCCCCAGAGAGGTCCTCTTTGGAGTCACTTCTTGGGGAGATGGCTGTGGTGAGCCTGGGAAGCCTGGGGTCTATACCCGTGTGGCCGTGTTCAAAGACTGGCTGCAGGAGCAGATGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029865-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=0.125 C2=0.182
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.2=100)
A:
PF0008921=Trypsin=FE(20.6=100)
C2:
PF0008921=Trypsin=PD(21.1=87.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGCGTTGGTACAGCTGTGG
R:
GTATAGACCCCAGGCTTCCCA
Band lengths:
252-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]