HsaEX7001798 @ hg38
Exon Skipping
Gene
ENSG00000237412 | PRSS56
Description
protease, serine 56 [Source:HGNC Symbol;Acc:HGNC:39433]
Coordinates
chr2:232522702-232523578:+
Coord C1 exon
chr2:232522702-232522861
Coord A exon
chr2:232523060-232523202
Coord C2 exon
chr2:232523416-232523578
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTTCCACCCCTTCCCTGCAGACG
3' ss Score
11.35
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
TTTGACCCGCGGACCTTCCACAACGACCTGGCCCTGGTGCAGCTGTGGACGCCGGTGAGCCCGGGGGGATCGGCGCGCCCCGTGTGCCTGCCCCAGGAGCCCCAGGAGCCCCCTGCCGGAACCGCCTGCGCCATCGCGGGCTGGGGCGCCCTCTTCGAAG
Seq A exon
ACGGGCCTGAGGCTGAAGCAGTGAGAGAGGCCCGTGTTCCCCTGCTCAGCACCGACACCTGCCGAAGAGCCCTGGGGCCCGGGCTGCGCCCCAGCACCATGCTCTGCGCCGGGTACCTGGCGGGGGGCGTTGACTCGTGCCAG
Seq C2 exon
GGTGACTCGGGAGGCCCCCTGACCTGTTCTGAGCCTGGCCCCCGCCCTAGAGAGGTCCTGTTCGGAGTCACCTCCTGGGGGGACGGCTGCGGGGAGCCAGGGAAGCCCGGGGTCTACACCCGCGTGGCAGTGTTCAAGGACTGGCTCCAGGAGCAGATGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237412-'7-9,'7-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=0.083 C2=0.164
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.2=100)
A:
PF0008921=Trypsin=FE(20.6=100)
C2:
PF0008921=Trypsin=PD(21.1=87.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGCAGCTGTGGACG
R:
GGTGTAGACCCCGGGCTT
Band lengths:
247-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains