DreEX6042683 @ danRer10
Exon Skipping
Gene
ENSDARG00000027609 | HPN
Description
hepsin [Source:HGNC Symbol;Acc:HGNC:5155]
Coordinates
chr16:45288384-45295045:-
Coord C1 exon
chr16:45294950-45295045
Coord A exon
chr16:45290666-45290808
Coord C2 exon
chr16:45288384-45288548
Length
143 bp
Sequences
Splice sites
3' ss Seq
CATCACTTTAACTCTTGCAGGAA
3' ss Score
8.71
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ATTATATCCAGCCCGTGTGTCTTCCGACCTACGGCCAGCGTTTGGCAGACGGACAGATGGGTACAGTTACTGGCTGGGGTAACGTGGAGTATTATG
Seq A exon
GAACTCAAGCAAATGTCCTCCAGGAGGCCCACGTGCCCATCATCAGTGATGCGGTGTGCAATGGCCCTGATTATTATGACAACCAGGTCACAACCACCATGTTCTGTGCTGGTTATGAGAAAGGAGGAACAGACTCATGCCAG
Seq C2 exon
GGGGACAGCGGTGGACCTTTCGTAGCAGCAGATGTGCTCTCTAAGACCAGCCGCTATCGTCTGCTGGGAGTTGTAAGCTGGGGCACAGGCTGTGCTATGGCCAAGAAGCCTGGCGTTTACACACGTGTGTCCCGCTTTCTGCCGTGGATTTCAACTGCTATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027609-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.3=100)
A:
PF0008921=Trypsin=FE(19.6=100)
C2:
PF0008921=Trypsin=PD(20.4=89.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCAGCCCGTGTGTCTTCC
R:
GCAGTTGAAATCCACGGCAGA
Band lengths:
250-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]