RnoEX0092102 @ rn6
Exon Skipping
Gene
ENSRNOG00000031099 | Tmprss12
Description
transmembrane serine protease 12 [Source:NCBI gene;Acc:100362912]
Coordinates
chr7:141958134-141966522:+
Coord C1 exon
chr7:141958134-141958402
Coord A exon
chr7:141963174-141963316
Coord C2 exon
chr7:141966271-141966522
Length
143 bp
Sequences
Splice sites
3' ss Seq
TGTCGTTCTGCTGCTGACAGGCA
3' ss Score
7.13
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
CGATCCTCTCAAGTGGAGGGCGGTGATCGGGACCACCGACCTCACCCGGAGCCACTCCCACAGCAGGAGTGTACGCGTGTCAGACATCGTCATCCAGCCAGATTTCATTCTGGAAACGTTCGTAAATGATATCGCACTGTTCCATTTAAAGAAGGCCGTGAGGTATAATGACCATATTCAGCCCATTTGCCTCCCTTTTGGTGTTTTCCAAAAACTGGACCAAAACACAACGTGTTTTGTAAGTGGCTGGGGAAGAACCCAAGAAGAAG
Seq A exon
GCAACGGCACAACCATTTTACAAGAGGCGAAAGTCCACTTCATCTCTCGAGAGATCTGTAACTCTGACAGAAGCTACGGAGGAGTGATTCCTAACACTTCCTTCTGTGCAGGTCATGAAAATGGGACCTTTGACACGTGCAGG
Seq C2 exon
GGTGACAGCGGTGGACCCCTAATGTGCTACCTAACAGAACACAAAAGATACTTTGTGATGGGAGTTACCAGTTACGGACACGGCTGCGGACGGAGGCATTTTCCCGGTGTCTACAGCAGCCCGTCCTTCTTCCAGCAGTGGCTGACGGCTTACCTGTCCCAGGGAAACACCAAGCACCTGTTTGACATGGACATGATGCTTGGCCAGGTCCTCATGGCCCTAGGTTCCATCATCCTTCTGGGGGCAACATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031099_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.3=100)
A:
PF0008921=Trypsin=FE(20.0=100)
C2:
PF0008921=Trypsin=PD(20.0=56.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCCCACAGCAGGAGTGTA
R:
TAGCACATTAGGGGTCCACCG
Band lengths:
246-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]