RnoINT0153335 @ rn6
Intron Retention
Gene
ENSRNOG00000031099 | Tmprss12
Description
transmembrane serine protease 12 [Source:NCBI gene;Acc:100362912]
Coordinates
chr7:141963174-141966522:+
Coord C1 exon
chr7:141963174-141963316
Coord A exon
chr7:141963317-141966270
Coord C2 exon
chr7:141966271-141966522
Length
2954 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TCTCCTGGGGTCTCTGGCAGGGT
3' ss Score
6.53
Exon sequences
Seq C1 exon
GCAACGGCACAACCATTTTACAAGAGGCGAAAGTCCACTTCATCTCTCGAGAGATCTGTAACTCTGACAGAAGCTACGGAGGAGTGATTCCTAACACTTCCTTCTGTGCAGGTCATGAAAATGGGACCTTTGACACGTGCAGG
Seq A exon
GTAAGACCAAAGATTTAGATGCGTTCTAAAGCCAGGAGGAACCCAGACAAAGGCCTTTGCTCTGGTAATCATAATTACCAGGCCTAATCTGAAATTCTGGTTTTAGATTGGATTTCCTGGTTCTTATCCCTATCAGGATCAAATCCAGGCAAAAATCTTTCCCCATTCCTTCTCTTCTCTTCGGGTGTGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTTTTTGAGGCAACATTTCTCTGTATAGCCCTGGTGGCCAGTCTGGCTTCCAATTCAGAGATCTGCCTGCCTCTGCCTCCCAAAGTGCTGGGATTAAAGGCGTGTGCCATTGCTGGCTAACTTATATTTTATTTATCTGGGTGACTTGCCTGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGCGTGTGTGTGTGTGCGTGTGTGTGTGTGTGCGTGTACACAATTGGTACCTAAGGAGGCCAGAAGAAGGCGTCAGATTCCCTGGAACTAGAGTTACGGATGGTTGTGAGCTGCCTTGTGGGTGCTGAGAATGGAACCCTGGTCCTCTGGAAGAACATCCAGTGCTCTTAATTCCTCAGCCACCTCTCCAGTCTCCTTCATTTCCTCTTTCTTTTCTTTTTCTGTCACCCAGAGCCTAATGTACCCATTTGCAGTGTGTAACTCAGTGGAGTTTTTAGAGTTGAGCCATCATTTCAAGTCTACTTTCAGGACATTTTTTTGTCACCACTAAAAGGGATCTAAGAGTCACATGTCAGGGCTGGAGACATGGCTCAGTTAGTGCTTGCAGTGCAAGCACGAGGACGTGAGTGCAGATCCCAGCGCCCACAGAAACAGCAGAATTCAGCACCGACCTAACCCCAAGGCCAGTGCAGGAGATGGGAAGGAGCAGAGACTGGAACCCCAGCAGCCTGCAGGCCTTGTAGACAGCAGTAAAACCAGAGACCCTGCCTCAAGCCAGAAGGGACAGAAGCCTGACAGCTGAGGCTGTCCCCTGACTGCTACTCATTTGCCATGACATTTATGACATGTGAAGACACCTGACATCATCCTCTGACCTCCACACGTATATGCTTATACATACATGTGTGCGTGCACACACTCAAAAGGAAACCACGCCTCATTCTCCTCACCCACCTCTACATATAGGCAGAGGTCCTCGGCACTTCTGGAGAAATCAACATGTGGTCCTTCATGACTGGCTTGTTCATTCTCCTGCCTGGGGGTTGCCCAGACTGGAAAGTGCAGTAATCCTGACCAGTCACTCGTCTCATTTCATCATACCCAATGCTACTAAAGGAAGAGGATTGTTTTTCTGAGGGGACAGAGCCCGCCCGTCATGTGCCTGCCCTCAGGACACAGCGCTGCCCGCTGCCGTGCAGCACAGCAGGCTCACCTTCTCCCTGTGTATGGTGGAGGCGGTAGGCACCCTTACCCCGAGTCTGATCACATGGCCCCACATGGTGCTCTGCGAGCATCTCCTCCCGTTCCACCTATGATGATTTGTTGTTGCTGCAGCCACTATGTCTGGTCATTGTTGCTTTGTCCTGAGGACCAATGCCAGGGCCTTGTGCATGTTAGCAGTGTTCTGCCACTGACCTCATTTGTTGTTTGTTGTTTGAGACAAGGTTCACTGTGTAGTCCAGGCTGGCCTGGAACTCACAGAGCTCTGCCTGCATCTACCTCCAAGTGCTGGGGTTCAAGGCACGCACCCTAGAGCCAGCTTTTGTTTTTGTACAGAATATTATTTGGATCTTAAGTTTCCAATTTTTATGAAATCCAATTTCCTTCCTGCCTTATCTCATATGACTTTCTCTTTCCACACGGGAGACTGGACTTCTCAATTCTAAGTGCACACTATGCCACAGAGCACCGTGCCATGTCAGCCCTCTTGTTCTTGATTCTTCTGCCTATTGCTGCTTCCAAACCCACTGCCCCGCACACAGGTGCCCTGCCCGGCACACAAGTGCTCTACACTCTTCTATTCCTGCATCCCTATTCCTGCACTCTAGGGTTTATGTCTCCTGTGTTCTCTTCCTTTAAAGTCTGTGCGTGAAACAGTGAAACATTTGGCTTAAATGAATTGCATTCCCTGAACAAACTCCATCGAACATAGTTATTTCAACAACCATTCAGTGCCTTCTCAGTTGACACTCAGAACTGGTCCTCAACCTCCAGATTCCGAGAGAATGATTTTGGCATCCTTGTGGCTGTGAGGGCATGGCCAGCATAGGAGCAGCACTTTTGGGTCTTGTATAACCCTTGAGAAGCTGGTTACTTAGGGCCCTGTTGACAGCCCTCCCCTTCCTTGCACCTCCCTGCATGAGCCAATCTCAGCTCTCGAGGACATGCCGTTCCTTGTGGACAAGGCATGGCAGCAAAAGGAACACGCACTGGAGCACTTCTCCCTTCTGAACAGCGCCTTTGCCACAAGGCCAGAGCAAAGGAAGTACCTAATGGACAGTTGTTTCAGTCCTTTGTGCTCCTCCCAAGCCATGTTTCCTCTGAGAACTGTGCTGTAAGATCCAAACGGTTCCATCTCTAGTCTTCTGGTTCACAACCGTGCAGGTGAAGTGAGCCTCCAGCTGTGTCTCAGCAGATGGCACACCTCCAGAATAAGCTGGAAATTAGGATGGAAATATTGTCCTGATTTCCAAAAATGTTATATTAATATGTTAAGGGTGCATCTTAGTAATGCGTGTGTGGCCGGGAGCCATCCCAGCAAAACGCCAGCTCCCTGCGCCTCCTTCCCCACGCTTCATCCTGATAGCAAGTGTGGAGAGCAGCCCATGTTGTCCTTGGAGGTTTGCTGAGAAGGGATGTTCACAGAGCAGGTGCACCATAGTGTAGCCGAGTTGTCTCAGCTCTGTGACTGCACAAGAAATAATCAGACTCTCCTGGGGTCTCTGGCAG
Seq C2 exon
GGTGACAGCGGTGGACCCCTAATGTGCTACCTAACAGAACACAAAAGATACTTTGTGATGGGAGTTACCAGTTACGGACACGGCTGCGGACGGAGGCATTTTCCCGGTGTCTACAGCAGCCCGTCCTTCTTCCAGCAGTGGCTGACGGCTTACCTGTCCCAGGGAAACACCAAGCACCTGTTTGACATGGACATGATGCTTGGCCAGGTCCTCATGGCCCTAGGTTCCATCATCCTTCTGGGGGCAACATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031099:ENSRNOT00000041938:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.0=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.0=56.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]