HsaINT0169662 @ hg38
Intron Retention
Gene
ENSG00000186452 | TMPRSS12
Description
transmembrane protease, serine 12 [Source:HGNC Symbol;Acc:HGNC:28779]
Coordinates
chr12:50885246-50887884:+
Coord C1 exon
chr12:50885246-50885388
Coord A exon
chr12:50885389-50887261
Coord C2 exon
chr12:50887262-50887884
Length
1873 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TTTTGGGACTTTTTTGACAGGGT
3' ss Score
5.7
Exon sequences
Seq C1 exon
GTAACGCTACAAATATTTTACAAGATGCAGAAGTGCATTATATTTCTCGAGAGATGTGTAATTCTGAGAGGAGTTATGGGGGAATAATTCCTAACACTTCATTTTGTGCAGGTGATGAAGATGGAGCTTTTGATACTTGCAGG
Seq A exon
GTAAGACCAAGTAATTTTCCTTTAAAATATTTTCTGAAGCCAGAAGGGAACTTGTCAAACAAGGCCTTTGATAACTTTCTGGTGGTCTTAATTATCAGGCCTAAAAATAATAAATCATTTTTTCTCCTTTTTAACTATTTCAACAATCCAAATCTTCTTGGTTCCTGATTCCATGGTTTCTGCTGTCATCAGTAGGCAGAATTTACCTTGAATTCTTTTTTTTAATCATTACCTTTGAGATATAATTCACCTAGTTAAAAGTGTACAGCTCAATTTTTTTTTTATTTGAGATAGTCTCGCTTTGTCACCCATGCTGGAGTGCAGTGACACAATCTCTGTTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTCATCCCTCAGCCTCCTAGGTAGCTGGAATTACAGGCACACATCACTATGCCCGGCCATTCTTTTTTTTTTTTTTTGTATTTTCAGTAGAGACAGGGCTTCACCTTGTTGACCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGGGTGAGCCACTGCGCCCAGCCTGTTACTGTCTTTTTTATTATAACCATCCTTGTGGGTGCGCAGTGGTATCTCATAGTGGTTTTAATTTGCATTTCCTTAATGACTAATGATGTTGAGCATTTTTGCATGTATTTATTAGCCATTTATATATCTTCTTTACAGAATGTCTATTTGGATCCCTTCCTCATTTTTAAATTGAGTTGTCTTTTTATCACTGAGTTATAAGCATTTTTCATATATTCTGGATACAAGTCCCTTACCAGATACATAATGTACAAAATTTTTCTCCCATTCTGTAGACTGTTTTTTCACTTTTCTGAGGTTATCATTTGCAGCACAAATGTTAATTTTTTTAATGAAGTACAATTGATCCATTTTTTGTTTTGTCTCATGCTTTTTTACTCTTCCTTTATTCCTCTTTTCTTCACTATTTCCAAAGCTACTAGTCCTTCACTCCTGAGTAACCCATGCTCTCACCTTTTCCTACTCATTCTCATTTCTGCAATCTAAAGTTTATCTTTTCTGTGTCCTTTTCCTTAAAAATCTTGCTGAATGAAATAGTAAAGAATCCAATCTAAGTGAATTGCATTCCTAGGCCAAACATCCTCATCATCAAAAAATAATTATTCAATGCCTGCCTTATATAGAGAATCGGAAACAGTTATCTCAGTGTCCTTGTTGTTTTCAGTGCATTAACAGGCCTTAGTAACAGCATTTGGGTGCATTCCTAATTTTGTATAGACTATGAAAGTGACCTGTCATTTATAATACTACTGAGAGGCTTTGCCATTTATGCTCATTTTCCTGCACTAGCTATTGTCAACACTTAGAAACTTGTCTTCTATTGCAAGATGCCAGTTTACTCCTCTCCCTGGCAAGCAAACCACACACGTGCCTAAAAGAATCCTTCATACATCTTAAAGTTATCCTTTCCACACGCAGTATTCAGCAAGAGAATATTCTAATAATAGACAGTTTTGACAATATTTTGCACACTTCCTAAATTATATTTCTCCTAAGTAATTATATTTAAAAATCCAAACAATTTGATTTATAGTATTCTGGCTCAAAACCAGGCAGATGAGAAATTTATCTACCAGCTATATGGTTCCTCCAAATACCTGGGTAAAATTGAATTCCTCCTGTTTGAGTTGGAAGTTTAAGCTCAAAATCTAGTGATCTTTATAAATTGGGGGTATATTGAAAATGTGTATTTATATAAATGTATGTTTGATGTAAATAATTTATTCCAGTGTTACTGTTGCTTGAAGAATACTAGAAGTAACAAACACTATTTTGGGACTTTTTTGACAG
Seq C2 exon
GGTGACAGTGGGGGACCATTAATGTGCTACTTACCAGAATATAAAAGATTTTTTGTAATGGGAATTACCAGTTACGGACATGGCTGTGGTCGAAGAGGTTTTCCTGGTGTCTATATTGGGCCATCCTTCTACCAAAAGTGGCTGACAGAGCATTTCTTCCATGCAAGCACTCAAGGCATACTTACTATAAATATTTTACGTGGCCAGATCCTCATAGCTTTATGTTTTGTCATCTTACTAGCAACAACATAAAGAAATTCTGAAGGCTTTCATATCTTTATTTTGCATTGTGTCCCTTTCTATGTTCTATATAATGAACATCATTTATTCTTCTAGCAATTAATTGCCTACATTAGAGATTTCATGTGAACATTTTATGGGCTATAAGTATTGTGACAGATATACAATTGTAATTTTGGCACTGAATCACATGTCTCCTTGAAATATCTTGATTATTTTATAATCATAATTCTGTATCTGGAATACTCATAGAGTTTGTACAAAATATTCAGTTAAACATATATTTTATGTGTATAAATGCCAAATAATAGTTTATAATTAAAATGAAAGCTGTCATTTGGTTAAATTAATAAAAATTCTTTCTTAGATTTTATTCTAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186452:ENST00000398458:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(25.0=45.2)
A:
NA
C2:
PF0008921=Trypsin=PD(19.9=56.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGTGATGAAGATGGAGC
R:
ACATAGAAAGGGACACAATGCA
Band lengths:
342-2215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains