MmuINT0162662 @ mm9
Intron Retention
Gene
ENSMUSG00000045631 | Tmprss12
Description
transmembrane (C-terminal) protease, serine 12 [Source:MGI Symbol;Acc:MGI:1922252]
Coordinates
chr15:100119702-100123484:+
Coord C1 exon
chr15:100119702-100119844
Coord A exon
chr15:100119845-100122940
Coord C2 exon
chr15:100122941-100123484
Length
3096 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TCTGTTGGGACCTCTGGCAGGGT
3' ss Score
4.18
Exon sequences
Seq C1 exon
GCAATGGCACAACCATTTTACAAGAGGCGAAAGTACACTTCATCTCTCGGGAGGTTTGCAGCTCTGACCAGGGCTACAGTGGAATGATTCCCAACACTTCATTCTGTGCAGGTCACGAAAATGGGACCTTTGACTCATGCAGG
Seq A exon
GTAAGACCAAAGACTTAGATGTTTTCTAAAGCTAGGAGAACCCAAAGGCCTTTGCTCGGGTAATGGTAATTATCAGGCCTAATCCAAAACTCTGGTTTTTTCCTACGTCAACAATCCAGACTTTGGGTTGGCTTTCCTGACTCTTATCCCTATCAGAATCAAATCCAGGCAATCCTTCCTACCCCCCACTCTTCCCTCTCCCTCCTCCCCCCACCCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTTTTTGAGGCAGGGTTTCTCTGTGTAGCCCTGGTTGCCCTGAACTTGCTCTGTAGACCAGTCTGGCTTTCAATTCAGAGATCTGCCTGCCTCTGCCTCCCAAATGCTGGGATTAAAGGTTTGAGCCACTACTGCCTAGCTTATAATTTTATTTTATTTTTCTGGGTGACTTGCCTAGATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACGTGTGTGTGGTGCCTGAGGAGGCCAGAAGAGGGTGTCAGATCCCCTGGAACTGGAGTTACAGATGGTTGTGAACAAGCTGCCTTGTGGGTGCTGGGAATTGAACCCTGGTCCTCTGGAAGAACATCCAGTGCTCTTAACTCCTGAGCCACCTCTCCAGTCTCCTTTGTCTCCCCTTTTTTTTTTGTCACCCAGAGCCATAATGCAGTGTGTGACACAGTGGAGGTTTTAAAGTTGAGCCATCACTCAAGTTTACTTTCAGGACATTTTTTGGTCACCACTAAAAGAAATCTAAGAGTCGGGTGTCAGGGCTGGAGACGTGGCTCTGTTAGTGCTTGCCGTGCAAGCATGGGGATGTGAGTGCAGATACAGCAGAGCAGGAATAGCAGAGCAAGGCCCACACCTCTAATCTCAAGGCCAATGCAGGAGCTGGAAGCAGAGAGATGGGAATCCCAGCACCTGCGGGCCCTGTAGGCAGCAGTAAAAGGAGAGAGACCCTGCCTCGGGACAGAAGCCTGACAGCTGAGGCTGTCCCCTGACTGCTATTCATTTACCATGACATTTATGACATGTGAAGATACTGGACATCATCCTGTGGCCTCCACACACATATATGCTTATACACACATGTGCACACACACACTCAAAGGGAAATCACGCCTCACTCTCTCATCCCTCTCTACACTGAGGCAGATACTAGCCTGCCGGACTCCCCATCCTCAGCATTTCTGGAAATATCAACACGGGGTCTTTCATGACTGCCTCATTCATTCTGTCTGGGGTTGCCCAGACTGGAGAGTGCAGTAGTCCTGGCGGTCACTTGTTTCCTGTCATCATGCCCAATGCCACTAAAGGAGGAAGGATTATTCTGTCTCACAGCTGCCGGGACAGAGTCTGCCTGTCATGTGCTCGCCCTCCGGAAACAGAGGCCGCTGCTGCTCACAGCAAACTCACCTTCTCCTTTGGTACAGTTGAGGCAGCAAGCACTCTCATCCCCGATCCTGAATACCCAGCTCTACACATGTGCTTTACACGTGTGCTTTATGCCCCCCCCCAACCCCACCCCTGTTCCATCTGCTGTGTTTTGTTGCTGCTGCTGTTGCTGCTGTGACGGGCCATTGTTGCTTTGTGCTGGGGAGCGATGCCAGGGCCTTGTGCATGTTAGCAATGTTTTGCCACTGACCTCATTTGTTATTTGCTTGTTGTTTGAGACAAGGTCTCACTGTGTAGTCCAGGCCGGCCTGAACTCAGAGCTCTGCTGCATCTGCCTCCAAGTGCTGGGGTTCAAGGCATGAACCCTACACCCAGCTATTTGTTTTTGTACAGAGTATTATTTGGACCTTAAGTTTCCAGTTTTTATGAAATCCAGTTTCCTTCTGGCCTTATCTTGTATGACTCTTTCTCTCTCCATGTGGGAAACTGGAACTTTCAATTCTAAGTGTACACTGTTCCACGGAGCATCGCACCATGCCATGTCAGCCCTCTCATGCTGACTCTGTGTGCCTATTGCTGCTTCCAAGCCCACTGCCCTGCACTGCACATAGGTGCTCTGCACTCCACACAAGTGTCCTGACTTCTCTTCCTGTGCGTTCCTATTCCTGCAATCTAGGGTGTATGTCTCCTGTGGTCTCTTCCTTAAAAATCTTTATGCCTGAAACAGTTTAACATGTAAATGAATTGCATCCCTGAGAAAACACCATCAAAAACAATTACTGCCCAGTGACACTCAGAACCGGTCCTTAACCTGCAGACACGGAAAGAATGACGTGGGCCTCCTTGTGGCTCTGAGGGCAGGACCAGCACTCATGACCAGCACTTTTGGGTCCTGTAGAAACCGTGAGAAGCTGGTTACTTAGGACACTGTTGACAGCCTCCCCTACCTCACACAGTTACTTAGGACAGTGTTGACAGCCTCCCCTACCTCACACAGTTACTTAGGACACTGTTGACAACCTCCCCTACCTCACACAGTTACTTAGGACACTGTTGACAGCCTCCCCTACCTCACACAGTTACTTAGGACACTGTTGACAGCCTCCCCTACCTCACACAGCCTGCATCAGCCAACTCAACACTTGAGGACAAGGCGTGGTAGCAAAGGGTGGGCACACAGACTGAAGCACTTTCACATCTGAACTGAGCCTTTTCCACACGATGCTAAAGCAAAGGAAACACGCTAATGGTCAGTTGTTTTCAATTTTTCTCTATTCCTACATTATGTTTCTCCTGAGAACCGCGTTGTGAGATCCAAACAATTTCATTTATAGTATATTCCAGTTCGCAGCCATGCAGATGAATTGATCCCCAAGCTGTACCTGAGCAGATGACACACCTCCTTTATAAGTTGGAATATTAGGCTGAAAATATTGTCCTGATTTCCCAAGTGTTATATTAACATGTTAAGGGGGCATCTTAGTAATTTGTGTGGCCTGGAGCCATCCCAGCAAAACACCAGCTCCCTGTACCCCTTCCCTGTGCTTCATCCTGATTGTAAGTGTAGAAAGAAAACCTGTGCTGTCCTTGGAGGTATTCACAGAGCAGGTGTCAGCTTGGCCAGGTTGTCTCAGCTCTGTGATTGCATAAGAAAGAACCAGACTCTGTTGGGACCTCTGGCAG
Seq C2 exon
GGTGACAGCGGGGGACCACTAATGTGCTACCTACCGGAACACAGCAGATACTTTGTCATGGGAATCACCAGTTACGGACATGGCTGTGGGCGGAGACATTTCCCCGGTGTCTACAGCAACCCGAGCTTCTTCCAGGAGTGGATGACACATTATTTATCACAGGGAAACATCAACCGCCTGTTTAATATGGACATAGTACTTGGCCAGGTCCTCACAGCCCTAGGTTCTGTCATCCTACTAGGAGTAACATAAGGAACCTTTGGGGCAGAGGGTCACCCTGCCCCTGCTGTGTCTACACCAGAACACTGTGTGCATGGCTCACTTTAGTGCGTCCATGTCAACACTGGGATGTTTTTGGTTTTGTTTTTTTAACAAAAAGGATTGTGACAAGTACATAGTTGTGACTTTTGGCACCAAACCCCATGTTTTCTCACTAGACCCTGATTCATAACTCTGTATTTGGAATACTTTCCTAGGGTTTGTATAAAATATTCATTTACTATATACTTTATGTGTATAAAGGCCAATAAACAGTTTATAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045631-Tmprss12:NM_183109:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.9=56.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: