RnoALTD0031312-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000031099 | Tmprss12
Description
transmembrane serine protease 12 [Source:NCBI gene;Acc:100362912]
Coordinates
chr7:141958134-141963316:+
Coord C1 exon
chr7:141958134-141958295
Coord A exon
chr7:141958296-141958402
Coord C2 exon
chr7:141963174-141963316
Length
107 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
TGTCGTTCTGCTGCTGACAGGCA
3' ss Score
7.13
Exon sequences
Seq C1 exon
CGATCCTCTCAAGTGGAGGGCGGTGATCGGGACCACCGACCTCACCCGGAGCCACTCCCACAGCAGGAGTGTACGCGTGTCAGACATCGTCATCCAGCCAGATTTCATTCTGGAAACGTTCGTAAATGATATCGCACTGTTCCATTTAAAGAAGGCCGTGAG
Seq A exon
GTATAATGACCATATTCAGCCCATTTGCCTCCCTTTTGGTGTTTTCCAAAAACTGGACCAAAACACAACGTGTTTTGTAAGTGGCTGGGGAAGAACCCAAGAAGAAG
Seq C2 exon
GCAACGGCACAACCATTTTACAAGAGGCGAAAGTCCACTTCATCTCTCGAGAGATCTGTAACTCTGACAGAAGCTACGGAGGAGTGATTCCTAACACTTCCTTCTGTGCAGGTCATGAAAATGGGACCTTTGACACGTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031099-6-4,7-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.3=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCCCACAGCAGGAGTGTA
R:
GCACGTGTCAAAGGTCCCATT
Band lengths:
250-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]