GgaEX6047192 @ galGal3
Exon Skipping
Gene
ENSGALG00000004866 | CELA1
Description
NA
Coordinates
chrUn_random:935886-937992:+
Coord C1 exon
chrUn_random:935886-936022
Coord A exon
chrUn_random:937613-937758
Coord C2 exon
chrUn_random:937843-937992
Length
146 bp
Sequences
Splice sites
3' ss Seq
GGACCCTTGCTCACTTGCAGCCA
3' ss Score
6.86
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTACGACATCGCGCTGCTCCGCCTGTCGGGTTCAGCCACACTCAACAGCTACGTGCAGCTGGCGGTGCTGCCCAGCCAGGGCACAGTGCTGGCCAACAACTATGCCTGCTACATCAGCGGCTGGGGAATGACCAGCA
Seq A exon
CCAACGGGCAGCTGTCGAGCGTGCTGCTGCAGGCATACCTGCCCGTCGTGAGCTACAGCACCTGCTCCAGCTACTCCTACTGGGGCTCCACTGTTAAGGACACCATGATCTGCGCTGGTGGGGATGGTGTGCGCTCCGGCTGCCAG
Seq C2 exon
GGTGATTCGGGAGGCCCCCTGCACTGCGCTGTCAATGGGGTGTACCAAGTGCATGGCGTCACCAGCTTCGTCTCCAGCTTGGGCTGCAACGTGCGCAACAAGCCCACCGTCTTCACCCGCGTCTCTGCCTACATCTCCTGGATATCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004866-'4-5,'4-4,5-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100),PF0263810=DUF187=FE(36.5=100)
A:
PF0008921=Trypsin=FE(20.6=100),PF0263810=DUF187=PD(29.4=75.5)
C2:
PF0008921=Trypsin=PD(20.2=94.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGCCACACTCAACAGCT
R:
AGGAGATGTAGGCAGAGACGC
Band lengths:
247-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]