GgaEX6047558 @ galGal3
Exon Skipping
Gene
ENSGALG00000013286 | KDM2A
Description
NA
Coordinates
chrUn_random:27634979-27637612:-
Coord C1 exon
chrUn_random:27637474-27637612
Coord A exon
chrUn_random:27636272-27636350
Coord C2 exon
chrUn_random:27634979-27635025
Length
79 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTCTCCCCACGCCAGACT
3' ss Score
7.11
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CGTGGCACAATGAGGCGGCGTTACGAGGACGATGGTATCTCCGATGACGAAATTGAAGGGAAGAGGACATTTGACCTTGAGGAAAAGCTCTCCACCAACAAGTTCAATTCTACCTTCGTCATCTTCATGGAAGGCAAAG
Seq A exon
ACTTTACAGTTGAATACATCCAGCGAGGTGGCCTGAGAGACCCCCTCATCTTCAGGAGCTCTGATGGCCTGGGTATAAA
Seq C2 exon
GATGCCAGATCCGGACTTCATCGTGAACGATGTGCGGCTGTGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013286-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGTTACGAGGACGATGGTA
R:
CACACAGCCGCACATCGTTC
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]