HsaEX0033246 @ hg19
Exon Skipping
Gene
ENSG00000173120 | KDM2A
Description
lysine (K)-specific demethylase 2A [Source:HGNC Symbol;Acc:13606]
Coordinates
chr11:66947550-66949363:+
Coord C1 exon
chr11:66947550-66947688
Coord A exon
chr11:66948791-66948869
Coord C2 exon
chr11:66949317-66949363
Length
79 bp
Sequences
Splice sites
3' ss Seq
ATATTTTCCTATGGTGACAGATT
3' ss Score
6.04
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CGTGGTACCATGCGACGACGCTATGAAGATGATGGCATTTCAGATGATGAAATTGAAGGAAAAAGAACTTTTGACTTGGAAGAGAAACTGCACACCAACAAATATAATGCCAATTTTGTTACTTTTATGGAAGGAAAAG
Seq A exon
ATTTTAATGTAGAGTATATTCAGCGGGGTGGCTTGAGAGATCCTCTGATTTTCAAGAATTCTGATGGACTCGGAATAAA
Seq C2 exon
AATGCCGGATCCAGACTTCACTGTGAATGATGTCAAAATGTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173120_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.191 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGTACCATGCGACGAC
R:
ATTCACAGTGAAGTCTGGATCCG
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)