GgaEX7003296 @ galGal4
Exon Skipping
Gene
ENSGALG00000016263 | EYS
Description
eyes shut homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:21555]
Coordinates
chr3:84840821-84894862:+
Coord C1 exon
chr3:84840821-84840985
Coord A exon
chr3:84849971-84850124
Coord C2 exon
chr3:84894754-84894862
Length
154 bp
Sequences
Splice sites
3' ss Seq
CTCTATTTTTGTTTTCAAAGCTA
3' ss Score
6.38
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ACGTAACTCTGTTTATTCCATCCTTCAATGGGAATTCTTATTTGGAACTTCCTTCTCTAACATCTGTATCTCAGATGAGGACTGCATCTGGGCAGGAAACAAGCAATCTGACAACTCTGTACTTGACAGTGAAAACAACTGCTCCAAGTGGCACTATTCTTTACA
Seq A exon
CTAGTGAAAAGAATTTTGGAGAACAGTTTCTTCACTTATATCTTGTGGAGGGAAGACCAACAGTTCGATTCAGTTGTGGAAACTCTCAGAACATTCTGACTGTATCTGGCAATCAAACCATTAGCAAGGGAATATTCATCCCTATCATAATAAG
Seq C2 exon
CTATATGTTGCCTGTTAGCAGTCTTGAAGGTTACTGCATGATTGAAATGGCTGCAGACAGAAATCCTCCCGTACAACACAGACTCCATCTCTCATATCAGGCATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016263-'4-20,'4-9,5-20=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.190
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0221019=Laminin_G_2=PU(32.2=90.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTTTATTCCATCCTTCAATGGGA
R:
TGGAGTCTGTGTTGTACGGGA
Band lengths:
245-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]