GgaEX7003786 @ galGal4
Exon Skipping
Gene
ENSGALG00000010521 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr4:37037467-37041096:+
Coord C1 exon
chr4:37037467-37037520
Coord A exon
chr4:37039056-37039082
Coord C2 exon
chr4:37041052-37041096
Length
27 bp
Sequences
Splice sites
3' ss Seq
GCTCCACTTGCTTTGAGCAGGGT
3' ss Score
3.88
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGAGAACCTGGTTTGCCTGGCATAGCAGGGGAGAAGGGAGCAGCGGGGCTTAAG
Seq A exon
GGTGACCCTGGAGAGAGAGGAGAAAAG
Seq C2 exon
GGTGATGCTGGAGAAAATGGACCAAAGGGTGACACAGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010521-'17-16,'17-15,18-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.0=100)
A:
PF0139113=Collagen=FE(10.1=100)
C2:
PF0139113=Collagen=PD(5.9=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACCTGGTTTGCCTG
R:
TTCTCCTGTGTCACCCTTTGG
Band lengths:
96-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]