GgaEX6034401 @ galGal4
Exon Skipping
Gene
ENSGALG00000010521 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr4:37039056-37045704:+
Coord C1 exon
chr4:37039056-37039082
Coord A exon
chr4:37041052-37041096
Coord C2 exon
chr4:37045672-37045704
Length
45 bp
Sequences
Splice sites
3' ss Seq
AATATGTGTTTTCATTTCAGGGT
3' ss Score
9.85
5' ss Seq
AAGGTACGC
5' ss Score
10.4
Exon sequences
Seq C1 exon
GGTGACCCTGGAGAGAGAGGAGAAAAG
Seq A exon
GGTGATGCTGGAGAAAATGGACCAAAGGGTGACACAGGAGAAAAG
Seq C2 exon
GGTGACCCTGGTTCGTCTGCTGCAGGAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010521-'18-17,'18-16,19-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(10.1=100)
A:
PF0139113=Collagen=PD(5.9=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACCCTGGAGAGAGAGGA
R:
CTTAATTCCTGCAGCAGACGA
Band lengths:
60-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]