MmuEX6074098 @ mm9
Exon Skipping
Gene
ENSMUSG00000058897 | Col25a1
Description
collagen, type XXV, alpha 1 [Source:MGI Symbol;Acc:MGI:1924268]
Coordinates
chr3:130222695-130232640:+
Coord C1 exon
chr3:130222695-130222721
Coord A exon
chr3:130225351-130225395
Coord C2 exon
chr3:130232608-130232640
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCACTTTGTCCTCTTCTCAGGGA
3' ss Score
10.02
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GGAGAACCTGGAAAAGAAGGAGAAAAG
Seq A exon
GGAGATGCTGGAGAAAATGGTCCCAAAGGTGATACAGGAGAAAAG
Seq C2 exon
GGTGACCCTGGATCATCTGCTGCAGGAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058897-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(14.6=100)
A:
PF0139113=Collagen=FE(10.4=100),PF0139113=Collagen=PU(3.1=18.2)
C2:
PF0139113=Collagen=PD(10.8=63.6),PF0139113=Collagen=PU(11.5=54.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACCTGGAAAAGAAGGAGA
R:
CTTAATTCCTGCAGCAGATGATCCA
Band lengths:
60-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: