MmuEX6074098 @ mm10
Exon Skipping
Gene
ENSMUSG00000058897 | Col25a1
Description
collagen, type XXV, alpha 1 [Source:MGI Symbol;Acc:MGI:1924268]
Coordinates
chr3:130519777-130529722:+
Coord C1 exon
chr3:130519777-130519803
Coord A exon
chr3:130522433-130522477
Coord C2 exon
chr3:130529690-130529722
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCACTTTGTCCTCTTCTCAGGGA
3' ss Score
10.02
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GGAGAACCTGGAAAAGAAGGAGAAAAG
Seq A exon
GGAGATGCTGGAGAAAATGGTCCCAAAGGTGATACAGGAGAAAAG
Seq C2 exon
GGTGACCCTGGATCATCTGCTGCAGGAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058897-'26-35,'26-34,30-35=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(12.9=100)
A:
PF0139113=Collagen=FE(14.6=100)
C2:
PF0139113=Collagen=PD(10.8=63.6),PF0139113=Collagen=PU(11.5=54.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACCTGGAAAAGAAGGAGA
R:
CTTAATTCCTGCAGCAGATGATCCA
Band lengths:
60-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types