RnoEX0023104 @ rn6
Exon Skipping
Gene
ENSRNOG00000050706 | Col25a1
Description
collagen type XXV alpha 1 chain [Source:RGD Symbol;Acc:1590105]
Coordinates
chr2:235634452-235644687:+
Coord C1 exon
chr2:235634452-235634478
Coord A exon
chr2:235637126-235637170
Coord C2 exon
chr2:235644655-235644687
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCACTTTGTCCTCTTCTCAGGGA
3' ss Score
10.02
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GGGGAACCTGGAAACGAAGGAGAAAAG
Seq A exon
GGAGATGCTGGAGAAAATGGTCCCAAAGGTGACACAGGAGAAAAG
Seq C2 exon
GGTGACCCTGGATCGTCCGCTGCAGGAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050706_MULTIEX1-5/8=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=FE(21.5=100),PF0139113=Collagen=PU(8.1=33.3)
C2:
PF0139113=Collagen=PD(10.8=63.6),PF0139113=Collagen=FE(16.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCTGGAAACGAAGGAGA
R:
CTTAATTCCTGCAGCGGACGA
Band lengths:
58-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]