GgaEX7005083 @ galGal4
Exon Skipping
Gene
ENSGALG00000027392 | OSBP
Description
oxysterol binding protein [Source:HGNC Symbol;Acc:HGNC:8503]
Coordinates
chr5:503667-504302:+
Coord C1 exon
chr5:503667-503865
Coord A exon
chr5:504066-504168
Coord C2 exon
chr5:504230-504302
Length
103 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTTGTCGCCCCCCAGATC
3' ss Score
11.59
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GCTTGCCGGGATTTCCTGCTGCTGGCCCAGACCCACAGCAAGAAGTGGCAGAAGTCGCTGCAGCACGAGCGGGATCAGCGCATCCGCCTGGAGGAGACGCTGGAGCAGCTGGCCAAGCAGCACAACCACCTGGAGAGGGCGTTCCGTGGTGCCACCGTTCTGCCCGCCGGCTCTGCTGGCAGTGGTGGCTCTGCCAAAG
Seq A exon
ATCCCTGCTGCTCCGCAAAAGGAGACTTGAGCGACGAGGATGATGACAACGAGTTCTTTGATGCCCCGGAGATCATCACTGTGCCGGAGAGCATGGGCCACAA
Seq C2 exon
TGCCCCCCCCCCCTCCAGGCGCACCGGCAGCAACATCAGCGGCACCAGCAGCGACATCAGCCTGGATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027392-'4-4,'4-3,5-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.701 A=0.800 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACCCACAGCAAGAAGTG
R:
CTGCTCATCCAGGCTGATGTC
Band lengths:
246-349
Functional annotations
There are 1 annotated functions for this event
PMID: 12727870
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: classical fluorescence spectroscopy, confocal microscopy, glutathione s tranferase tag, green fluorescent protein tag, mutation analysis, pull down. ELM ID: ELMI001275; ELM sequence: EDDENEFFDAPE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]