GgaEX7009416 @ galGal4
Exon Skipping
Gene
ENSGALG00000027177 | MYH1C
Description
myosin, heavy chain 1C, skeletal muscle (similar to human myosin, heavy chain 1, skeletal muscle, adult) [Source:RefSeq peptide;Acc:NP_001107181]
Coordinates
chr18:594104-595397:-
Coord C1 exon
chr18:595088-595397
Coord A exon
chr18:594868-594941
Coord C2 exon
chr18:594104-594191
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTCATTTTTGTCATTTGCAGAGG
3' ss Score
10.42
5' ss Seq
CGGGTACAG
5' ss Score
4.22
Exon sequences
Seq C1 exon
CCCATGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTTCCCAAGGCGACTGACACCTCTTTTAAGAACAAGCTCTATGACCAGCATCTGGGCAAGTCCAGCAACTTTCAGAAGCCCAAGCCTGCCAAAGGCAAGGCTGAGGCCCACTTCTCCCTGGTGCACTATGCTGGCACAGTGGACTACAATATCACTGGCTGGCTTGAGAAGAACAAGGACCCCCTGAACGAAACTGTCATTGGGCTGTACCAGAAATCATCTGTGAAGACACTGGCCTTACTGTTTGCCACCTATGGTGGAGCAGATGCAG
Seq A exon
AGGCTGGTGGTGGAGGCAAAAAGGGTGGCAAGAAGAAGGGTTCTTCTTTCCAAACAGTTTCTGCTCTTTTCCGG
Seq C2 exon
GAGAACTTAAACAAGCTGATGACCAATCTACGGAGCACTCACCCCCATTTTGTCCGCTGCATCATTCCAAATGAAACAAAAACACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027177-'15-23,'15-21,16-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.400 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.1=100)
A:
PF0006316=Myosin_head=FE(3.5=100)
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGACCCCCTGAACGAAAC
R:
TGGAATGATGCAGCGGACAAA
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]