HsaEX6021082 @ hg19
Exon Skipping
Gene
ENSG00000109063 | MYH3
Description
myosin, heavy chain 3, skeletal muscle, embryonic [Source:HGNC Symbol;Acc:7573]
Coordinates
chr17:10544602-10546040:-
Coord C1 exon
chr17:10545734-10546040
Coord A exon
chr17:10545557-10545627
Coord C2 exon
chr17:10544602-10544689
Length
71 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCTTATTGCTTTCAGCTG
3' ss Score
8.37
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
CCTATGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCCAAGGCAACAGACACCTCCTTCAAGAACAAGCTGTATGACCAGCATCTTGGAAAGTCCAACAACTTCCAGAAGCCCAAGGTGGTCAAAGGCAGGGCCGAGGCTCACTTCTCACTGATCCACTATGCGGGCACCGTGGACTACAGTGTCTCAGGTTGGCTGGAGAAGAACAAGGACCCTCTGAACGAGACTGTGGTTGGGCTGTACCAGAAGTCTTCCAACAGGCTCCTGGCACACCTCTATGCCACGTTTGCCACGGCGGATG
Seq A exon
CTGACAGTGGAAAGAAGAAAGTTGCCAAGAAGAAGGGTTCTTCCTTCCAAACTGTCTCTGCCCTTTTCAGG
Seq C2 exon
GAAAACCTGAACAAGCTGATGTCAAATTTAAGAACTACTCACCCTCATTTTGTGCGTTGTATAATTCCCAATGAAACCAAAACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109063-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.0=100)
A:
PF0006316=Myosin_head=FE(3.4=100)
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCAGGTTGGCTGGAGAA
R:
ACGCACAAAATGAGGGTGAGT
Band lengths:
176-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)