GgaEX7009650 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NFI9]
Coordinates
chr17:279318-281910:+
Coord C1 exon
chr17:279318-279353
Coord A exon
chr17:281266-281301
Coord C2 exon
chr17:281774-281910
Length
36 bp
Sequences
Splice sites
3' ss Seq
CCGTGGTGTTTGCCCAACAGGAG
3' ss Score
8.68
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GAGCAGCTGGAGACCCTGGATTGCCAGGACCAAAAG
Seq A exon
GAGCAAAAGGAGAGCCAGGATTTCCAGAACCTTTGG
Seq C2 exon
TCTGCTCAAAAGCCAGGAACTGCCAAGAGCTGCTGGATAAAGGGAAGATCCTGAGCGGATGGTACACCATCCACCCCCAAGGCTGCAATGCTACCACTGTCTTCTGCGATATGGACACGGATGGTGGAGGATGGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009151-'5-7,'5-5,6-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.692 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.7=100)
A:
PF0139113=Collagen=PD(13.1=61.5)
C2:
PF0014713=Fibrinogen_C=PU(19.7=91.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGACCCTGGATTGCCA
R:
AGACAGTGGTAGCATTGCAGC
Band lengths:
120-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]