GgaINT0126349 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NFI9]
Coordinates
chr17:279318-281301:+
Coord C1 exon
chr17:279318-279353
Coord A exon
chr17:279354-281265
Coord C2 exon
chr17:281266-281301
Length
1912 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CCGTGGTGTTTGCCCAACAGGAG
3' ss Score
8.68
Exon sequences
Seq C1 exon
GAGCAGCTGGAGACCCTGGATTGCCAGGACCAAAAG
Seq A exon
GTAAACAATGCTGAGCTGAATTTATGATGTGAGTGTGTTTAGTTCAGCATCCACCCTGAGTCACTGTGAAACAACACACCAGGTGGGAGCAGCTATAGAAAAATAAAAGCACCCTGAAGGGCAGTGGGCAGGGCTGTCTGACAACAGCTGCCCTGCACTGCAGGGCCTGGGCTGCAGGGGCTCACTGCAGGGTCTTGCTGCTTCCCCAGGCAATGTGAGCAGCCCCTCTCCAAACCTGTCACCAACAAGAGTTGCCTGAAGCATGAGAGCCTGGTAACTAGTTTGCTCCAGCTGTCACAGCTGCTCCCAGAACACCTCCCAAAGCCCTTCCCAGCAATAACTGTTCCCTTGTTGGAGCTTTTGACCCTGCTTCCCTTCCTGGGTGTGTTCCAAGTCCTTCCCACACCTACCTACTCCTGTTCCACGTGTCCCATCACCATGGGAGTCTGTGGCACAAAGTGTTGCACCACACTCAGTGGGCAGGCAGAGCATACAGGTCCAGTAGGGACACGTGTTATGTCAGCCTTGCTGGATGGACATCCTGGCCCCTAACTAGCTGGTGGAGGAAAAAATCTCATTAGGGGCCCAACAGCCCCAGGACAGTGAGGCTCCATGTCCCCAGGTCCAACTGGTAGTGAGGCTGAAGGTGCACTCCCAGTAGGCATACGTATACTTAAAGTAAATATAGATAATTTAAAAGGGCTGCTCTGAAAGTGCTGCCTCCTGTTTTATGATATTGGCCCACAATGCCAGAAACAGATGTTGGTGGGATGGCAGCAGAGGCTGAACCTTCCCACCAATATCCCATTACATGTTGTTGCTGTGTAGCAGAGGGGTGGTCTGACGGAATGGTGCATGACATGGGAGTGCGTATGGAGCAGAGTGGTGTCATTAAATTCTTCTATGCAGAAAAAATACCAATGGGTGCCATCCGCCAATGCTGGTGAATGTTGATGGAGACCAACCAGTGGATGTGAGCACAGTGAGGGGCGGGTGGTGTGCTTCAGCAGTGGCAATGGCTACAGTAGGTCACCTCTGCTGGTTTATACAAACACAGCATGCAGGTTCATGTTCATCACTGGTGGAAATGCAGAGCTAATGGTGGTGACTATGTTGGTAATTCGTGTTTTGTAGCTGATAATTTTCTCTATCAAACAGTGTTACTGTGCTCACTGTATCTGTTGTAGATTCCATAGAAATAAATAGGAGGCATTACTTTTGGAGGAACTTATGTACATGTAGTAAATATATATACAAATATACACATATATACATGTCCATCTTCACAGCCACTCAGAGCACTCAGATTAGCACAGGAAGCACCAACAGCTGAGCAGGACAGCAGCCCACTACAGGGAATGCTTCTATTCACACTTATTGACTCTCACGCTAGCAGTATCTGACCTGGCTCTGTCCCACTGGCTGCTGGCACCTGGGCAGCCCTCCTCCAGGTGCTGTGTTCTTCCCTTACAGACACAGACACACAGAACAGACAGCTTTCACCCAGGACAGTGTTAGAAAGACAACAGGACAGTGGTTATCAGGACAGGGCATGGCCAGACAAGTATAGATCAGCTATCTTTTCCCTGCCAGCCATTTGTATCCTACTCCTCTCCTTCCTTCCAAAATCACCTAAATCCCTCCTTTTACCCACCTTTGGATCCTCTCCTGGACATCCCACAATAAGTTCTATGCAGCCTCAAAATCCCCTTCCTCTGCATCCAACACCATGCTCTGCATCCCTTCACAGCTGCGTGATGGGGCAAGCAGGGGCTGCTGCTGGTGGTGCTAGGTGTCATGGCTGGATGTGGGGCTGGGGCTCAGGATTTCGCTTGAGAAGAAAACGTTGTTGCAGGAGAAGGAAGGACCAGGTGTGGAAGGCAGAGAGAAATCCGTGGTGTTTGCCCAACAG
Seq C2 exon
GAGCAAAAGGAGAGCCAGGATTTCCAGAACCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009151:ENSGALT00000014902:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.692
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.7=100)
A:
NA
C2:
PF0139113=Collagen=PD(13.1=61.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]