GgaINT0126349 @ galGal3
Intron Retention
Gene
ENSGALG00000009151 | FCN3
Description
NA
Coordinates
chr17:658467-661059:+
Coord C1 exon
chr17:658467-658502
Coord A exon
chr17:658503-660934
Coord C2 exon
chr17:660935-661059
Length
2432 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
TTCCCCACTCTGCTCAAAAGCCA
3' ss Score
1.9
Exon sequences
Seq C1 exon
GAGCAGCTGGAGACCCTGGATTGCCAGGACCAAAAG
Seq A exon
GTAAACAATGCTGAGCTGAATTTATGATGTGAGTGTGTTTAGTTCAGCATCCACCCTGAGTCACTGTGAAACAACACACCAGGTGGGAGCAGCTATAGAAAAATAAAAGCACCCTGAAGGGCAGTGGGCAGGGCTGTCTGACAACAGCTGCCCTGCACTGCAGGGCCTGGGCTGCAGGGGCTCACTGCAGGGTCTTGCTGCTTCCCCAGGCAATGTGAGCAGCCCCTCTCCAAACCTGTCACCAACAAGAGTTGCCTGAAGCATGAGAGCCTGGTAACTAGTTTGCTCCAGCTGTCACAGCTGCTCCCAGAACACCTCCCAAAGCCCTTCCCAGCAATAACTGTTCCCTTGTTGGAGCTTTTGACCCTGCTTCCCTTCCTGGGTGTGTTCCAAGTCCTTCCCACACCTACCTACTCCTGTTCCACGTGTCCCATCACCATGGGAGTCTGTGGCACAAAGTGTTGCACCACACTCAGTGGGCAGGCAGAGCATACAGGTCCAGTAGGGACACGTGTTATGTCAGCCTTGCTGGATGGACATCCTGGCCCCTAACTAGCTGGTGGAGGAAAAAATCTCATTAGGGGCCCAACAGCCCCAGGACAGTGAGGCTCCATGTCCCCAGGTCCAACTGGTAGTGAGGCTGAAGGTGCACTCCCAGTAGGCATACGTATACTTAAAGTAAATATAGATAATTTAAAAGGGCTGCTCTGAAAGTGCTGCCTCCTGTTTTATGATATTGGCCCACAATGCCAGAAACAGATGTTGGTGGGATGGCAGCAGAGGCTGAACCTTCCCACCAATATCCCATTACATGTTGTTGCTGTGTAGCAGAGGGGTGGTCTGACGGAATGGTGCATGACATGGGAGTGCGTATGGAGCAGAGTGGTGTCATTAAATTCTTCTATGCAGAAAAAATACCAATGGGTGCCATCCGCCAATGCTGGTGAATGTTGATGGAGACCAACCAGTGGATGTGAGCACAGTGAGGGGCGGGTGGTGTGCTTCAGCAGTGGCAATGGCTACAGTAGGTCACCTCTGCTGGTTTATACAAACACAGCATGCAGGTTCATGTTCATCACTGGTGGAAATGCAGAGCTAATGGTGGTGACTATGTTGGTAATTCGTGTTTTGTAGCTGATAATTTTCTCTATCAAACAGTGTTACTGTGCTCACTGTATCTGTTGTAGATTCCATAGAAATAAATAGGAGGCATTACTTTTGGAGGAACTTATGTACATGTAGTAAATATATATACAAATATACACATATATACATGTCCATCTTCACAGCCACTCAGAGCACTCAGATTAGCACAGGAAGCACCAACAGCTGAGCAGGACAGCAGCCCACTACAGGGAATGCTTCTATTCACACTTATTGACTCTCACGCTAGCAGTATCTGACCTGGCTCTGTCCCACTGGCTGCTGGCACCTGGGCAGCCCTCCTCCAGGTGCTGTGTTCTTCCCTTACAGACACAGACACACAGAACAGACAGCTTTCACCCAGGACAGTGTTAGAAAGACAACAGGACAGTGGTTATCAGGACAGGGCATGGCCAGACAAGTATAGATCAGCTATCTTTTCCCTGCCAGCCATTTGTATCCTACTCCTCTCCTTCCTTCCAAAATCACCTAAATCCCTCCTTTTACCCACCTTTGGATCCTCTCCTGGACATCCCACAATAAGTTCTATGCAGCCTCAAAATCCCCTTCCTCTGCATCCAACACCATGCTCTGCATCCCTTCACAGCTGCGTGATGGGGCAAGCAGGGGCTGCTGCTGGTGGTGCTAGGTGTCATGGCTGGATGTGGGGCTGGGGCTCAGGATTTCGCTTGAGAAGAAAACGTTGTTGCAGGAGAAGGAAGGACCAGGTGTGGAAGGCAGAGAGAAATCCGTGGTGTTTGCCCAACAGGAGCAAAAGGAGAGCCAGGATTTCCAGAACCTTTGGGTGAGTTTCGTCCTGGGCCTTTTGTGCCACCATCAGCGCTATGGAACAGCACAGCGACGACAGCAAGAAGGCAGAAGCCCTCCATCAGAGGTCAGGACAGGGCCGCAGCAGTAACCAACTCAATGACACCAAAAGGCAGAGTAAGGAGATAGCAGTTAGCCTGTTTGTTTCTCGCAGCCACATGCAGCTTCTGTGTGTCTCCTCGTAATCCCTCCAGGCTGGGGTAGGTAAGGACATCTACATCTGATAAGCGCATTGCTCAGACCCTCCAAAGCCTCCTTGCAGATGAGTCTGAGCACATCTATCTTTTATAAAGTGCCCATCACCCTGTGACATAGTGGCTCAAGGAGCAGCAGGATTTGTCCCCACATAGGTGTACACCCGTGAGGCTGAAAGCTCTGGGCATGGGGCTGTAGTGCTCTCTGTTGCAGTGAGCACGCCGTAACTCTTTCCACTTCCACTCTTTCCCCACTCTGCTCAAAAG
Seq C2 exon
CCAGGAACTGCCAAGAGCTGCTGGATAAAGGGAAGATCCTGAGCGGATGGTACACCATCCACCCCCAAGGCTGCAATGCTACCACTGTCTTCTGCGATATGGACACGGATGGTGGAGGATGGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009151:ENSGALT00000014902:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.3=100),PF0014713=Fibrinogen_C=PU(0.5=7.7)
A:
NA
C2:
PF0139113=Collagen=PD(8.5=11.9),PF0014713=Fibrinogen_C=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]