BtaINT0061829 @ bosTau6
Intron Retention
Gene
ENSBTAG00000048155 | FCN2
Description
Bos taurus ficolin (collagen/fibrinogen domain containing) 1 (FCN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001010996]
Coordinates
chr11:106828270-106828822:+
Coord C1 exon
chr11:106828270-106828302
Coord A exon
chr11:106828303-106828694
Coord C2 exon
chr11:106828695-106828822
Length
392 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
CCCCCCATTTCCCCTCCCAGGAC
3' ss Score
10.54
Exon sequences
Seq C1 exon
GAGAGTCGGGGCAGCTTCATTCATGTGCCACAG
Seq A exon
GTGACTGCACACACGCCGACCCCAACCCCAGACCTCAGCCAGGACCTGCTCCCGTGGGGGCGGTTGACCAGAAGGCCAGCTGCACAGACTCTGGTTCTAGCATCCAGAGATGAAACATTCTCTGCACATCTCACTCCCCAGTTACAGGCAGCTATTGCCTGAATGACGTGTGTCTTCCACAGCGGTCTTCCTGGGGAGCTTATAACTTTCCCTGGAAGGCGGGGTGCCCAGACCATGGTGGGGACAGCTCTGGGAGGTGGGGGTGGTCTCTGTCTGTCCCAGGCCTCGGTGCCACCATCCCCCAGGCAGGTGTCCCCTCCTCTGCCCCCTCCCCTGCCCCTGCCCTGCCCAGGCTCCTGACCTGGCATCCATCCCCCCATTTCCCCTCCCAG
Seq C2 exon
GACCTCGGACCTGCACGGAGCTGCTCACCAGGGGACACTTTCTGAGCGGCTGGCACACCATCTACCTGCCCGACTGCCGGCCCCTGACTGTGCTGTGTGACATGGACACCGACGGCGGGGGGTGGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048155:ENSBTAT00000065623:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(8.2=41.7),PF0014713=Fibrinogen_C=PU(0.1=0.0)
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(19.7=97.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development