GgaINT1001391 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NFI9]
Coordinates
chr17:281266-281910:+
Coord C1 exon
chr17:281266-281301
Coord A exon
chr17:281302-281773
Coord C2 exon
chr17:281774-281910
Length
472 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CACTTCCACTCTTTCCCCACTCT
3' ss Score
-0.11
Exon sequences
Seq C1 exon
GAGCAAAAGGAGAGCCAGGATTTCCAGAACCTTTGG
Seq A exon
GTGAGTTTCGTCCTGGGCCTTTTGTGCCACCATCAGCGCTATGGAACAGCACAGCGACGACAGCAAGAAGGCAGAAGCCCTCCATCAGAGGTCAGGACAGGGCCGCAGCAGTAACCAACTCAATGACACCAAAAGGCAGAGTAAGGAGATAGCAGTTAGCCTGTTTGTTTCTCGCAGCCACATGCAGCTTCTGTGTGTCTCCTCGTAATCCCTCCAGGCTGGGGTAGGTAAGGACATCTACATCTGATAAGCGCATTGCTCAGACCCTCCAAAGCCTCCTTGCAGATGAGTCTGAGCACATCTATCTTTTATAAAGTGCCCATCACCCTGTGACATAGTGGCTCAAGGAGCAGCAGGATTTGTCCCCACATAGGTGTACACCCGTGAGGCTGAAAGCTCTGGGCATGGGGCTGTAGTGCTCTCTGTTGCAGTGAGCACGCCGTAACTCTTTCCACTTCCACTCTTTCCCCAC
Seq C2 exon
TCTGCTCAAAAGCCAGGAACTGCCAAGAGCTGCTGGATAAAGGGAAGATCCTGAGCGGATGGTACACCATCCACCCCCAAGGCTGCAATGCTACCACTGTCTTCTGCGATATGGACACGGATGGTGGAGGATGGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009151:ENSGALT00000014902:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(13.1=61.5)
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(19.7=91.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]