GgaEX7010600 @ galGal4
Exon Skipping
Gene
ENSGALG00000026836 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr23:4923536-4923903:-
Coord C1 exon
chr23:4923859-4923903
Coord A exon
chr23:4923707-4923751
Coord C2 exon
chr23:4923536-4923589
Length
45 bp
Sequences
Splice sites
3' ss Seq
CACCTCTCCTCTCCCTCCAGGGC
3' ss Score
12.13
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGTGACCCCGGCCCCCCCGGGCCACCAGGGATGATGGGTCCTCCG
Seq A exon
GGCTTCAAGGGCAAAACTGGGCACCCGGGGCTCCCAGGGCCAAAG
Seq C2 exon
GGTGACTGTGGCAAACCTGGTCCTCCCGGGAGCACGGGCCGTCCCGGGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026836-'73-79,'73-78,75-79=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.0=66.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCACCAGGGATGATGG
R:
GAGGACCAGGTTTGCCACAG
Band lengths:
52-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]