GgaEX7010928 @ galGal4
Exon Skipping
Gene
ENSGALG00000000252 | SCN4A
Description
sodium channel, voltage gated, type IV alpha subunit [Source:HGNC Symbol;Acc:HGNC:10591]
Coordinates
chr27:1636890-1643483:-
Coord C1 exon
chr27:1643127-1643483
Coord A exon
chr27:1639632-1640060
Coord C2 exon
chr27:1636890-1637019
Length
429 bp
Sequences
Splice sites
3' ss Seq
GTTTGCTTGGTCCCTTCCAGGTG
3' ss Score
10.54
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
CTGAGGGTCTTCAAATTGGCCAAGTCTTGGCCCACCCTCAACATGCTCATCAAGATCATTGGCAACTCAGTGGGCGCGCTTGGGAACCTGACACTGGTGCTGGCCATCATCGTCTTCATCTTCGCCGTGGTGGGGATGCAGCTCTTTGGGAAGAGCTACATGGAGTGCGTCTGCAAGATCTCCCTCGACTGCACACTGCCCCGCTGGCACATGCACGACTTTTTCCACTCCTTCCTCATTGTCTTCCGCATCCTCTGCGGTGAGTGGATCGAGACCATGTGGGACTGCATGGAGGTGGCCGGCCAGACCATGTGCCTCATCGTCTTCATGATGGTCATGGTCATCGGGAACCTGGTG
Seq A exon
GTGCTCAACCTGTTCTTGGCTTTGCTGCTGAGCTCCTTCAGCGCCGACAGCCTGGCGGCCTCTGATGATGATGGTGAGATGAACAACCTGCAGATCGCCATCGGCCGGATCACCAGGGGCATCGACTTCGTGAAGTCTTCTGTCCTCATGCTGATCCGGAGGCTGTGGAAGGGCAAAAAGGTGGCCCCGGAGGAAGAGCAGGAGCCCAGCAAAGGGGACAACTCCGTGCTGAACCATGTGGATAGCAGCCCGGATCCCAAGCCAGATTACATGGACGGAGTTGCAGGGAAGGAATATTTGTTGATGGACGAGTTGGACCACATGAATTTCATCAACAATCCCAACCTGACTGTGCAGGTCCCCATCGCCTCAGAGGAGTCCGACCTCTACGAGGAGACGAGCACTCAGTCTGACACTGAGGATGCCAAG
Seq C2 exon
AACCCCCTTTCCAGTGACAACGCCTCATCCCTGTGCAGCACTGTGGACTACAAACCACCGCTGCCCGAGGAGGAGGAGGTGGCCGAAGAGGCTGAAGAGAGCAATGAGCCCGAGGAGTGCTTCACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000252-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.399 C2=0.591
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(62.4=100)
A:
PF0052026=Ion_trans=PD(4.2=5.6),PF065128=Na_trans_assoc=PU(57.2=83.2)
C2:
PF065128=Na_trans_assoc=FE(20.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCCTCAACATGCTCATC
R:
TGAGGCGTTGTCACTGGAAAG
Band lengths:
354-783
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]