RnoEX6050161 @ rn6
Exon Skipping
Gene
ENSRNOG00000012134 | Scn4a
Description
sodium voltage-gated channel alpha subunit 4 [Source:RGD Symbol;Acc:3636]
Coordinates
chr10:94516350-94524095:-
Coord C1 exon
chr10:94523739-94524095
Coord A exon
chr10:94518353-94518826
Coord C2 exon
chr10:94516350-94516485
Length
474 bp
Sequences
Splice sites
3' ss Seq
GACCGCCCCTTGCTTCCTAGGTC
3' ss Score
9.72
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
CTGCGTGTCTTCAAGCTGGCCAAGTCATGGCCAACACTCAACATGCTCATCAAAATCATTGGCAACTCAGTGGGCGCGCTGGGCAACCTGACCCTGGTGCTGGCCATCATCGTCTTCATCTTCGCCGTGGTGGGCATGCAGCTGTTCGGCAAGAGCTATAAGGAGTGTGTGTGCAAGATCGCCTCAGACTGCAACCTGCCTCGCTGGCACATGAACGACTTCTTCCACTCCTTCCTCATCGTCTTCCGCATCCTCTGCGGGGAATGGATCGAGACCATGTGGGACTGCATGGAGGTGGCCGGCCAGGCCATGTGCCTCACCGTCTTCCTCATGGTCATGGTCATTGGCAACCTGGTG
Seq A exon
GTCCTGAATCTGTTCCTGGCTCTCCTGCTGAGTTCCTTCAGTGCTGACAGCCTGGCGGCCTCGGATGAGGATGGCGAGATGAACAACCTACAGATTGCCATCGGGCGTATCAAGTGGGGCATCGGTTTTGCCAAAACCTTCCTCCTGGGGCTGTTGCGTGGCAAGATCCTGAGCCCCAAGGAAATAATACTCAGCCTCGGTGAGCCCGGGGGTGCCGGGGAAAATGCCGAGGAGAGTACTCCCGAGGATGAGAAGAAGGAGCCGCCACCGGAAGATAAGGAGCTGAAAGACAATCATATCCTGAACCACGTGGGCCTGACCGATGGCCCCCGCTCCAGCATCGAGCTGGACCACCTTAACTTCATCAACAACCCCTACCTCACCATCCACGTGCCCATTGCCTCCGAGGAGTCTGACCTGGAGATGCCCACAGAGGAGGAGACAGACGCCTTCTCGGAGCCTGAGGATATCAAG
Seq C2 exon
AAGCCCCTACAGCCCCTCTACGACGGGAACTCCTCCGTCTGCAGCACAGCTGACTACAAGCCCCCTGAAGAGGACCCCGAGGAGCAGGCTGAGGAGAACCCCGAGGGGGAGCAGCCTGAGGAATGCTTCACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012134-'20-17,'20-16,22-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.430 C2=0.696
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(62.1=100)
A:
PF0052026=Ion_trans=PD(4.2=5.1),PF065128=Na_trans_assoc=PU(59.6=84.8)
C2:
PF065128=Na_trans_assoc=FE(20.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCCATCATCGTCTTCAT
R:
TTCTCCTCAGCCTGCTCCTC
Band lengths:
357-831
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]