GgaEX6046907 @ galGal3
Exon Skipping
Gene
ENSGALG00000006060 | SCN8A
Description
NA
Coordinates
chrE22C19W28_E50C23:64350-66413:-
Coord C1 exon
chrE22C19W28_E50C23:66057-66413
Coord A exon
chrE22C19W28_E50C23:64874-65344
Coord C2 exon
chrE22C19W28_E50C23:64350-64467
Length
471 bp
Sequences
Splice sites
3' ss Seq
TGTGACCTCTTCTCCCTCAGGTG
3' ss Score
11.66
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
CTGAGAGTCTTCAAACTGGCCAAGTCCTGGCCCACTCTGAACATGCTGATAAAAATCATCGGTAACTCAGTGGGTGCTTTGGGCAACCTGACCTTGGTGTTGGCCATCATCGTCTTCATCTTTGCGGTGGTGGGCATGCAGCTCTTTGGCAAAAACTACAAGGAGTGTGTCTGCAAGATCAATCCGGAGTGTGAGCTACCCCGCTGGCACATGCACGATTTCTTCCACTCCTTCCTTATTGTCTTCCGTGTGTTGTGTGGGGAATGGATTGAGACCATGTGGGATTGCATGGAGGTGGCAGGACAGGCCATGTGCTTGATTGTCTTCATGATGGTCATGGTCATCGGAAATTTAGTG
Seq A exon
GTGCTGAACCTGTTCCTGGCTTTGCTGCTGAGCTCCTTCAGTGCAGACAACCTGGCAGCAACGGATGACGATGGGGAGATGAACAACCTGCAGATCTCTGTCATTCGCATCAAGAAGGGCATTGCCTGGACCAAGGCGAAAGTGCGTGAATTCATGCAGGCTCACTTCAAGCAGAGAGAGGCAGATGAGGTCAAACCCTTGGACGAGCTGTATGACAAGAAGGTGAACTGCATTGCCAACCACACGGGGGCTGATATCCACAGAGACATCGATTATCAGAAGAACGGCAATGGCACAACCAGTGGAATTGGGAGCAGCGTGGAGAAATACATCATCGATGAAGACCACATGTCCTTCATCAACAACCCCAACCTCACCGTCCGGGTGCCTATTGCTGTCGGGGAGTCAGACTTTGAAAATCTCAACACAGAAGATTTCAGCAGCGATACAGACCCTGATGGCAGCAAAGAG
Seq C2 exon
AAACTGGATGATACCAGCTCCTCCGAAGGCAGCACCATTGATATAAAGCCTGAAGTGGAAGAAGTCCCTGTGGAGGCACCAGAAGAGTATCTGGACCCGGATGCATGCTTCACTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006060-'19-19,'19-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.197 C2=0.550
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(62.1=100)
A:
PF0052026=Ion_trans=PD(4.2=5.1),PF065128=Na_trans_assoc=PU(61.0=84.7)
C2:
PF065128=Na_trans_assoc=FE(17.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTCTTCATCTTTGCGGTGG
R:
GCATCCGGGTCCAGATACTCT
Band lengths:
352-823
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]