Special

ENSG00000196876 @ hg19

Biotype
protein_coding
Gene Symbol
SCN8A
Description
sodium channel, voltage gated, type VIII, alpha subunit [Source:HGNC Symbol;Acc:10596]
Coordinates
chr12:51985020-52202297:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
51.91
30.72
0
Alternative 3'ss
2
chr12:52080152-52080153
+
48.09
30.72
0
Exon Skipping
70
chr12:52173986-52174055
+
40.31
78.96
3
Exon Skipping
123
chr12:52174433-52174555
+
25.74
96.35
2
Exon Skipping
119
chr12:52077958-52078076
+
90.45
25.64
0
Exon Skipping
90
chr12:52080152-52080241
+
90.25
27.03
0
Exon Skipping
129
chr12:52080875-52081003
+
93.09
24.39
0
Exon Skipping
92
chr12:52082542-52082633
+
32.48
79.7
1
Exon Skipping
92
chr12:52082789-52082880
+
54.94
80.4
1
Intron Retention
798
chr12:52099408-52100205
+
9.6
36.59
0
Intron Retention
23994
chr12:52115693-52139686
+
12.2
29.93
0
Intron Retention
5770
chr12:52174556-52180325
+
9.41
27.27
0
Intron Retention
979
chr12:52183203-52184181
+
11.33
27.42
0
Intron Retention
1538
chr12:52081004-52082541
+
32.2
74.82
0
Intron Retention
10720
chr12:52082634-52093353
+
40.24
69.78
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000023033 Scn8a 1-to-1
Mouse mm9 ENSMUSG00000023033 Scn8a 1-to-1
Rat rn6 ENSRNOG00000005309 Scn8a 1-to-1
Cow bosTau6 ENSBTAG00000021339 SCN8A 1-to-1
Chicken galGal4 ENSGALG00000006060 SCN8A 1-to-1
Chicken galGal3 ENSGALG00000006060 SCN8A 1-to-1
Zebrafish danRer10 ENSDARG00000005775 scn8aa 1-to-2
Zebrafish danRer10 ENSDARG00000018032 scn8ab 1-to-2
Fruitfly dm6 FBgn0264255 para 10-to-1