Special

ENSRNOG00000005309 @ rn6

Biotype
protein_coding
Gene Symbol
Scn8a
Description
sodium voltage-gated channel alpha subunit 8 [Source:RGD Symbol;Acc:3638]
Coordinates
chr7:142575672-142684114:+
Assembly
rn6

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]


EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
41.69
58.86
0
Alternative 3'ss
2
chr7:142595604-142595605
+
58.31
58.86
0
Alternative 5'ss
0
NA
+
58.36
58.62
0
Alternative 5'ss
2
chr7:142594549-142594550
+
41.64
58.62
0
Exon Skipping
92
chr7:142598064-142598155
+
36.64
99.77
1
Exon Skipping
92
chr7:142598315-142598406
+
68.83
99.71
1
Exon Skipping
171
chr7:142579215-142579385
+
4.21
17.02
0
Exon Skipping
131
chr7:142650594-142650724
+
2.77
15.38
0
Exon Skipping
68
chr7:142666771-142666838
+
12.02
93.12
3
Exon Skipping
123
chr7:142667180-142667302
+
63.3
100
2
Intron Retention
1828
chr7:142653395-142655222
+
2.42
50.35
0
Intron Retention
1055
chr7:142594551-142595605
+
3.96
95.35
0
Intron Retention
5127
chr7:142667303-142672429
+
10.78
63.83
0
Intron Retention
458
chr7:142595694-142596151
+
2.73
76.65
0
Intron Retention
2034
chr7:142596281-142598314
+
11.06
82.28
0
Intron Retention
9810
chr7:142598407-142608216
+
10.37
73.55
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000196876 SCN8A 1-to-1
Human hg19 ENSG00000196876 SCN8A 1-to-1
Mouse mm10 ENSMUSG00000023033 Scn8a 1-to-1
Mouse mm9 ENSMUSG00000023033 Scn8a 1-to-1
Cow bosTau6 ENSBTAG00000021339 SCN8A 1-to-1
Zebrafish danRer10 ENSDARG00000005775 scn8aa 1-to-2
Zebrafish danRer10 ENSDARG00000018032 scn8ab 1-to-2
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