RnoEX0078604 @ rn6
Exon Skipping
Gene
ENSRNOG00000005309 | Scn8a
Description
sodium voltage-gated channel alpha subunit 8 [Source:RGD Symbol;Acc:3638]
Coordinates
chr7:142575686-142580189:+
Coord C1 exon
chr7:142575686-142575955
Coord A exon
chr7:142579215-142579385
Coord C2 exon
chr7:142580089-142580189
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTTCCTGTTTCTCAGGCC
3' ss Score
10.47
5' ss Seq
GAGGTGCGC
5' ss Score
7.52
Exon sequences
Seq C1 exon
GCGCGGCTGCTCGCACCACCAGGCCCTGATAGTTTCAAGCCTTTCACCCCTGAGTCGCTGGCAAACATCGAGAGGCGTATTGCCGAGAGCAAGCTCAAGAAACCACCAAAGGCGGATGGCAGCCACCGGGAAGACGATGAAGACAGCAAGCCCAAGCCAAACAGTGACCTGGAGGCTGGGAAGAGTTTGCCTTTCATCTACGGGGACATCCCGCAAGGCCTGGTTGCGGTTCCCCTGGAGGACTTTGACCCTTACTATTTGACGCAGAAA
Seq A exon
GCCTGGGACTGAACAGCCTGTGTCTAACCAGCTGCTGCATTGTGAGGAAGCCCTAGAAGGTCCAAATCTCAGTGCTGACGTGTCTTTATAAGAACCCCGGTGCATGGAACAGTAACATGCCTCTCAGACTTCAACTCCACAATCTCTGGATTTGGTTTTCTACAAAGTGAG
Seq C2 exon
GAAGAGAATCTCCCTCCCACAGCAACCTGCAGCTGCCTACCGGATGGCATAGTGGAAAAGGCAATGTCTTAGTTATGGTTTCATGGCTGTGAAGAGACGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005309-'3-4,'3-3,4-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000080923fB12993
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAAGACGATGAAGACAGC
R:
GCGTCTCTTCACAGCCATGAA
Band lengths:
244-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]