Special

ENSG00000196876 @ hg38

Biotype
protein_coding
Gene Symbol
SCN8A
Description
sodium voltage-gated channel alpha subunit 8 [Source:HGNC Symbol;Acc:HGNC:10596]
Coordinates
chr12:51590266-51812864:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
+
30.66
97.68
0
Alternative 5'ss
334
chr12:51780272-51780605
+
69.34
97.68
0
Exon Skipping
60
chr12:51768113-51768172
+
3.29
31.18
0
Exon Skipping
70
chr12:51780202-51780271
+
41.15
78.96
3
Exon Skipping
123
chr12:51780649-51780771
+
17.9
96.35
2
Exon Skipping
119
chr12:51684174-51684292
+
90.02
45.24
0
Exon Skipping
90
chr12:51686368-51686457
+
89.94
41.3
0
Exon Skipping
129
chr12:51687091-51687219
+
92.09
27.83
0
Exon Skipping
92
chr12:51688758-51688849
+
38.66
91.08
1
Exon Skipping
92
chr12:51689005-51689096
+
54.71
82.23
1
Exon Skipping
100
chr12:51593954-51594053
+
2.16
17.71
0
Exon Skipping
54
chr12:51788695-51788748
+
87.9
87.86
0
Exon Skipping
285
chr12:51786542-51786826
+
78.73
100
0
Intron Retention
798
chr12:51705624-51706421
+
9.97
36.59
0
Intron Retention
23994
chr12:51721909-51745902
+
12.56
34.05
0
Intron Retention
6286
chr12:51774363-51780648
+
14.06
72.88
0
Intron Retention
5770
chr12:51780772-51786541
+
9.11
27.27
0
Intron Retention
979
chr12:51789419-51790397
+
13.39
50.56
0
Intron Retention
1538
chr12:51687220-51688757
+
29.5
75.93
0
Intron Retention
10720
chr12:51688850-51699569
+
36.65
69.78
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000023033 Scn8a 1-to-1
Mouse mm9 ENSMUSG00000023033 Scn8a 1-to-1
Rat rn6 ENSRNOG00000005309 Scn8a 1-to-1
Cow bosTau6 ENSBTAG00000021339 SCN8A 1-to-1
Chicken galGal4 ENSGALG00000006060 SCN8A 1-to-1
Chicken galGal3 ENSGALG00000006060 SCN8A 1-to-1
Zebrafish danRer10 ENSDARG00000005775 scn8aa 1-to-2
Zebrafish danRer10 ENSDARG00000018032 scn8ab 1-to-2
Fruitfly dm6 FBgn0264255 para 10-to-1