RnoEX0078608 @ rn6
Exon Skipping
Gene
ENSRNOG00000005309 | Scn8a
Description
sodium voltage-gated channel alpha subunit 8 [Source:RGD Symbol;Acc:3638]
Coordinates
chr7:142655223-142658590:+
Coord C1 exon
chr7:142655223-142655579
Coord A exon
chr7:142657739-142658209
Coord C2 exon
chr7:142658473-142658590
Length
471 bp
Sequences
Splice sites
3' ss Seq
TGCTGCTGCTGCTGCTGTAGGTG
3' ss Score
6.63
5' ss Seq
GATGTAAGG
5' ss Score
6.35
Exon sequences
Seq C1 exon
CTCCGAGTCTTCAAGCTGGCCAAGTCCTGGCCCACCCTGAACATGCTGATCAAGATCATCGGGAACTCCGTGGGTGCCCTGGGCAACCTGACCCTGGTGCTGGCCATCATCGTCTTCATCTTCGCCGTGGTGGGGATGCAGCTGTTTGGAAAGAGTTACAAGGAGTGCGTCTGTAAGATCAACCAGGAGTGCAAGCTCCCGCGCTGGCACATGAACGACTTCTTCCACTCCTTCCTCATCGTCTTCCGAGTGCTGTGTGGGGAGTGGATCGAGACCATGTGGGACTGCATGGAGGTGGCCGGCCAGGCCATGTGCCTCATTGTCTTCATGATGGTTATGGTCATTGGCAACCTGGTG
Seq A exon
GTGCTGAACCTATTCCTGGCCTTGCTTCTGAGCTCCTTCAGCGCAGACAACCTGGCGGCCACAGACGACGACGGGGAAATGAACAACCTGCAGATCTCAGTGATCCGGATCAAGAAGGGCGTGGCCTGGACCAAAGTGAAGGTGCACGCCTTCATGCAGGCTCACTTCAAGCAGCGGGAGGCGGATGAAGTGAAACCCCTCGACGAGCTGTATGAGAAGAAGGCCAACTGCATCGCCAACCACACGGGCGTGGATATCCACCGGAACGGCGACTTCCAGAAGAACGGGAACGGAACCACCAGCGGCATCGGCAGCAGCGTGGAGAAGTACATCATCGACGAGGACCACATGTCCTTCATTAACAACCCAAACCTGACCGTCCGGGTGCCCATTGCTGTGGGCGAGTCTGACTTCGAGAACCTCAACACAGAGGATGTTAGCAGCGAATCAGACCCTGAAGGCAGCAAAGAT
Seq C2 exon
AAACTGGACGATACCAGCTCCTCAGAAGGAAGTACCATCGACATCAAGCCTGAGGTGGAAGAAGTTCCCGTGGAGCAACCTGAGGAATACTTGGATCCGGACGCCTGCTTTACAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005309_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.223 C2=0.575
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(62.1=100)
A:
PF0052026=Ion_trans=PD(4.2=5.1),PF065128=Na_trans_assoc=PU(61.0=84.7)
C2:
PF065128=Na_trans_assoc=FE(17.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCCTGAACATGCTGATC
R:
CTGAGGAGCTGGTATCGTCCA
Band lengths:
352-823
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]