GgaINT0000331 @ galGal3
Intron Retention
Description
NA
Coordinates
chr16_random:25465-26160:+
Coord C1 exon
chr16_random:25465-25645
Coord A exon
chr16_random:25646-25884
Coord C2 exon
chr16_random:25885-26160
Length
239 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CTGCCCTGGCTGTGCCTCAGGGT
3' ss Score
6.94
Exon sequences
Seq C1 exon
GTGGATGGCGAACTCTTCGGGAAGTACGACAGTAAGAGCCGATGGGTGCACCCCATCGCAGAGATGCTGCCGCAGGAGGACCGGGAGCACTGGGACACACAGACCCAGAAGGCGCGGGACGTTGAGCTGGTTTTCTGCGGGTTCCTGGGCAGGCTGCAGGTACACTACAACAAAAGTGGAG
Seq A exon
GTAAGCGCGGCGGAAAGGTGCAGTGTGATGTTGCTGGGATGGGGACTCCGTGTGGCAGGGGATCCATGAGGCGTCCGCCAGCCCCACTGAAGTCTGGCCTTGCCCCACACCCGGCTGTGCTGGGCTGTCCATGTGTGGTGGCACTGTCCCTGCTTCTCCGTACTTGAACCCACCCACCCCATCCCAGCGCACCCAACAGCCCAAGAAGCCCTTCACCCCCTGCCCTGGCTGTGCCTCAG
Seq C2 exon
GGTCTCACACGCTGCAGAAGATGTTTGGCTGTGACATCCTGGAGGACGGCAGCATCCGAGGGTACGATCAGTATGCATTTGATGGGAGGGACTTCCTCGCCTTTGATATGGACACAATGACGTTCACTGCGGCAGACCCAGTGGCAGAAATCACCAAGAGGAGATGGGAGGAGGAAGGGACGTATGCTGAGAGATGGAAGCATGAGCTGGGGACGGTCTGCGTTCAGAACTTGAGGAGATACCTGGAGCATGGGAAGGTGGCACTGAAAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024427:ENSGALT00000000460:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(40.3=98.4)
A:
NA
C2:
PF0012913=MHC_I=PD(59.1=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCAGGTACACTACAACA
R:
TTTCAGTGCCACCTTCCCATG
Band lengths:
299-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]