GgaINT0000626 @ galGal3
Intron Retention
Description
NA
Coordinates
chrE64_random:47843-52034:+
Coord C1 exon
chrE64_random:47843-48172
Coord A exon
chrE64_random:48173-51704
Coord C2 exon
chrE64_random:51705-52034
Length
3532 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TATTTCTGTGTGTTTTTCAGGCC
3' ss Score
11.5
Exon sequences
Seq C1 exon
GCTCGGTTGTTTCCAGTTTTGCCCCAATTCGACTGGTGGACGGCCCAGGTCTCTGTGCTGGGAGACTGGAAGTGTTTCACAATGAGCAATGGGGAACGGTGTGTGATGACAGCTGGGAGTTCACAGATGCTGCAGTGGTGTGCCGACAGCTGGACTGTGGGGTGGTGATATCAGCTCCACCGAGGGCTTACTTTGGGCAAGGACAGGGACCCATGTGGCTGGATGATGTCAACTGCACGGGGACAGAAGCTGCCCTCTCTGAATGCAAGTTCAAGGGATGGGGTATCCACAACTGTTATCATCATGAAGTTGCCAGTGTGGTGTGCTCAG
Seq A exon
GTAACCATTGTCAATCACACAGCAGCAAGCATTCCTGAGGCTTGAATTGGTAATTCCATGTGGTTGTAAGGGTCTGTGGCCAGTATGGAGACCTTTGAAATCAATCCCTCATCATCCACCTTTGGATGGAGGACAGCACCTATACTCAGATAAAGCACAAGAGAGTTAAATGGGCTATAGCCCATTTGTACTGGCATCTCCACAATGAGATCTCTGGCATGCTTTTGACTGGTGTTATATAGCACAAATCCTGGCAGCTAGTATTATCCAGAGATCATTCTCATCAGTTAAATAGCCTAAACTATATTGGATTTCAGTCCAATCAAGCCCATTCTAAGCAAGCCTTGGGCACCAACTCCTCTTTTTTTTTTTTTTTTTCTCCTTCTTCATCATCTTCTTCTTCTTTTTTTTTTTTTTTTTCCCAGCTAATTGGCATCACATCTAAAAGTCTTCCCTAGCTCTCACTGTCAGTGCATCCTTGACCCCCAAAGCTGTTCAGCCTCTTGTGCTAATGCATTTCTGGCAGCTCCAGATTTCACAGAGCAGAAAGTGTCCTCTTACATGTTTATTTTTTCTGATGTTGCAGGATCAGGCATTTCTGACCTAGCAGACCTCCGCCTTGTGAATGGCTCTGATAAATGCTCTGGAAGGCTTGAAGTTTTTCATGACCAGCGCTGGGGAACTGTCTGTGCTGACGACTGGGACCTGGCCGAAGCTTATGTGGTTTGCAGGCAGCTGGGCTGTGGGACACCACGCTCTGCCTCAAACTCTTCCCAGTTTGGGGAAGGACCTCATCTGACCTGGGTTGATGCTGTGGAGTGCACAGGGATGGAGCGAGCCCTCTTTGAATGCAAAGTCAAGCTCTGGGGAGCCCAGAACTGCAAGTCCAAGGGATATGCGAGTGTCGTGTGCTCTGAGGCTGTAGGTCAGTGTTGGTGAGTCAGGTATCAGCCCTCTCCTTACAAGGTCATGCCACTTGTCCCTGTAAATTCACCCTTCAACTCCTCCTTATCTTGTCTGAACTACTGCTTGTTTCTATAGACCAACCAGGGAGCACAAAATATTTTTCTTTTAGGGAGCTTACAGAATGCAAAGTCCTTGGAAATCCCAAACCTGGAATCCCCAGAAATCCCAAGCCTGTAAGACGCAGGCTTTCTTCAGGGGACCATCATGAAATCATACAATCGTTTAGGTTGGAAAAGATCTCTAAGGTTATCAGGTCTAAGCATTAGCCTAGCACTTCCTAGTCTACCACTAAACTCTGTTCCTGAGCATTGCACCTACTCCATCTTTTAAATACCTCCAGGGATGGAGACTCAACTCCTTTCCTGGTCAGCTTGTTACAATGCTTCACAACCCTTTCAGTAGAGAAATTTTTCCTAATATCCAAACTCAACCTTTCTTGGTACAACTTAAAGTTATTTCCTCTCGTCCTATCACTTGTTGCCTGGGAGAAAATGCAAGGAGTCCTGATGATGCAGGGCTGTATGTCCAGGCAGCTACTCTGCTTGTGTTTTTCCAGTCAGTGTTCCTCAGCCATTCTACTATACAGTCCCTGGGAAGTCCCTTCTCTTTGCCACACTATTCCTTGCTCGTGCAATTACCTTTAGAAATTAATGTCTTTCTCCTCTTCTCCCAAGTAGCATGCTCATTCTTGGCAAAAATGAAGCAGGGAAAGGGAGTATGTATTGCGAGCAGGCAGAGGGCTGCTTTTATGCAATACCTTTATCTGAGTGATTGGTGGCTCTGCATTGATCAGCTATGTTTGCCTTTGCACTACCTGCTGCAGTTTACCCTGTCTAGCAAACTGGGACAGAAATTGTCCTCTTTGTGCATGTCAGGTGTGCAGGAAACATCTGTGTTTCTATCAGGGTTGTACCCTCAGTAACACCCATCCTTTCTCACTGGTAGAGTCAAGAACAGGAGAGGGGAAGCATGAAAAAAACATGCGTCAGCTTGCACCTTGTGCATGGACCCTCAATAAAGTGTGTGAGAATTAGCTGGAGCTACCAGTGAAGCAGACACTTCATGTGGCATAAGCAGGTTGTTCCATTACAGTCCTCACCTGTCTGCTGTGACTGATGCTGACATCTCAGCATGCACGCTGAGGAGAAGATGAACATTCTTTTCATTCTGCTAGGTCTGTGTGTGCTGCTGGTGCATAAGGTGCTGTGGATATAGCACTCCCAAGCATCTCAGCACCTGTGTATCTACAGCCTAGACTCCAGATTTGATCTTTTCCCATAAAACATGACTTCAGTCTCAAATACACGGCAAGGACTTGGCCAGTATGTAAGGCATGGGCAAAAAACTCTTGATCCAAAGACTGTTCATGCATGCATGTCCACAGTGTGGCATTTGCAAAAGTACAATGCAAGAATAGTTGCAAGATCACAGGATGGAGAGGTCCACCATGTTGCTGGCAACCAGACAGGCAGGAATTTATAGCCAGGACCTATTCTCACCCTGGTTATGTTTTCAGACATAGACCTACGGAGCCCAGAAGCCATACGGCTGGTGAATGGCCCACACCGCTGCTCTGGACAGGTGGAGGTGTTTCACAATCAGCAGTGGGGGACGGTGTGCAATGATGACTGGGATCTGAATGATGCCAATGTGGTGTGCCGGCAGCTGGACTGTGGAACGGCAGTGTCTCTGAGGAGACCTTCATCTGGGCAAGATTCTAGACCCATCTGGCTAGAAGGGGTGAGATGTCTTGGGACAGAAGCTACCCTCACTGAATGCCCAGTCAAGCCTAGAGGGCTCTATAGTTGCAGCCATTTGGAAGATGCTGGTGTTGTGTGCTCAGGTAATCGAGTGCTTTCTTTGCAGATGGATCAAGCCCCATCCTGTAAGCTGAGGTTTGGGAACAGTAATAAGGGCAAGCTGGCCAATAATTCTTGTGTCCAGGACTTCTCAGACTGGTGAAAACTGTTAAAAAAGAGAGCTACTGGACACATAGACAAATGTGGGGAATGGGACATGGGCAGTAGGAAAAAGCAGCACCTTAAGACACACCTTAGTGTCTGAAGATGTCCAAGGGTGTTCAAGTTTTCCTGTGGAAAAGCACCTGCAGTCATCCTGGAGTGGTAGCAGGAGAGTACAACAATGCTTCTTGAGTTGGCAGCAGATGCACCAGCTCCCCAGCCTGGGTTAAGAACAGGCAGAGTGACTTCCAGTGCTGCTAACTGCCAGGTCATGAGGATAAATATGGAAAGAAGTACTGGAATATGCCAGGGTAATATGACACACACTTGTAGCTAGCTAATACTTGTCTTGGAAGAGAAACCTCAATGGATAGATCAGTGTGGTGGTCAGCAGCCAGGAAAGTACAAAGAACAAATAGAAAAATGTCCTTGGCCATTTTCTCTAGTCCAAGAAGTAGGTAACCATCAAGTAAACCTAGATCATGCAGCTTGCTGCAGCAACACCACCTAGATAGACTACGGGGATGTTCATCTTTCTCCAGCTCATTAGATTTTATGGTATATGAGCATAACCTTTATAATGCCTATTTCTGTGTGTTTTTCAG
Seq C2 exon
GCCCGAGGATTTCCAATATTTCCACACTTCGGCTGGTGGATGGTTTGAGTGAGTGTGCTGGGAGGGTAGAGGTGTTTTACAACAATGAGTGGGGGACAGTCTGCGATGACAACTGGGACATGAGTGATGCGGCGGTGGTGTGCCGGCAGCTGGGATGCGGGACTGCGCTGTCAGCCCCGGGATCGGCTCGGTTTGGGTGGGGATACAGCCGCATCTGGCTGGATGAAGTAAGCTGCACAGGGGAGGAAAATGATATCTCACAGTGTGCAGCTAAGACTTGGGGTGTCCACAACTGCCATCATGGAGAAGATGCTGGTGTGGTGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103:ENSGALT00000014816:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=88.3)
A:
NA
C2:
PF0053013=SRCR=WD(100=88.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]