GgaINT0000822 @ galGal3
Intron Retention
Description
NA
Coordinates
chrE22C19W28_E50C23:850448-850822:-
Coord C1 exon
chrE22C19W28_E50C23:850734-850822
Coord A exon
chrE22C19W28_E50C23:850606-850733
Coord C2 exon
chrE22C19W28_E50C23:850448-850605
Length
128 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCTTTATTTGTTGTGCACAGGCA
3' ss Score
8.91
Exon sequences
Seq C1 exon
CCCAAACGCTCATCCCCCATCCTTCTCCCACCACCATAGAAGCTAAAAATGGGGTGAGCCATGACACCAGCCCCATGGATTTAAGCAAG
Seq A exon
GTGAGATCCTGTAGCTTTCTTAGGCCTTTAGGGCTGGTTTTGCTCTTACAAAATGCATCTACAGCAGAGTGCTGTGGGCTTTCACTCTGGGGTAAGAGCCTGAAAATCCCTTTATTTGTTGTGCACAG
Seq C2 exon
GCAGAGCTGCACTTCATGAAGAAAATTCCCACCGGGGCTGAAGCAGCAAATGTGCTGGTGGGAGAGTTGGATTTCCTTCAGCAGCCCATCATGGCCTTTGCCCGCCTCAGCCCGGCCGTCCTCCTCTCGGGCATGACAGAAGTCCCCATCCCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423:ENSGALT00000013720:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.633 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(11.7=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(21.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGCTCATCCCCCATCCTT
R:
CTGGTTGGGATGGGGACTTCT
Band lengths:
244-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]