MmuINT0147273 @ mm10
Intron Retention
Gene
ENSMUSG00000023032 | Slc4a8
Description
solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Coordinates
chr15:100788160-100789167:+
Coord C1 exon
chr15:100788160-100788245
Coord A exon
chr15:100788246-100789009
Coord C2 exon
chr15:100789010-100789167
Length
764 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
AGGTTCTTGTGCGTTTCTAGGTG
3' ss Score
9.5
Exon sequences
Seq C1 exon
GGCAAACGGTGTCTCCTCAGTCAGCTACAAACCTTGAAGTGAAGAATGGTGTGAACTGTGAGCACAGCCCTGTGGATCTAAGCAAG
Seq A exon
GTGAGGAGATGTGGCAAGTTGGCCTCTCTGTGCTATTCACAGACGGGCGCTGCTTCTGTGGACAGGGTGCCCATCACCCTAATCTTCCCCCTTCATACACCCAGCCTGGGGAGGCTGGCTCCTCAGGGATGGCCCTGCAGTTCCTTCTCATCTTCAAGTTGTCAGGACGGTATTCTGCGGCTGCCTCCTGTCACTCCTAAAGTCTCAGACGACTCTTGGGGGCTGTGACTCGTGCATCTGACGAAGCAGTCAGGTATTAGAAAAAGAAAAATACCGTGACCCAGAGCTTCCGAGGAGCACGATGGGACGGAATTCAGGCCAGAGTTCTTGCACTAACTTTGATTCTTGAGGTGGCTCAGTGGATAAAGGTGTTTGCTGCCCGAGGATCTGAGTTCCACCCTGAAACCCTCACCAAGCAAGGAGAGTACGGACTCTCACAAGGTGTTCTCTGGCCTCCACACGTGTGCTGCTGCTGCATGTGTGGACACGCACGTGCACACACGCTGACCTACATGTATACATTTCTAGTCAATGTTCCCTCCCTGGTCTTAGTTGCTTTGTTTGTTTTGTTTGTTTGTTTTGTTTTTAAACAGTGGGACTGATGGGTTCTGTGCTGCCTCCACTCAGGGCTTTTGTGGAGGTGAACTAGAACAGTGAGAGACGGTTTTAACCTTGAACGACTCGTGAAGTGGAGCTGTGAAGAAGGTGATTGGTGTTGAAGACGATGGCCCCCAAATCACCTGAAGGTTCTTGTGCGTTTCTAG
Seq C2 exon
GTGGATCTTCACTTCATGAAAAAAATTCCCACGGGGGCAGAGGCCTCCAATGTCCTGGTGGGAGAGGTGGATACGCTGGACCGGCCCATCGTGGCCTTCGTGAGGCTCTCCCCGGCTGTGCTGCTCTCTGGCCTGACGGAAGTGCCCATCCCAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023032:ENSMUST00000023776:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.552 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(10.9=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGTCTCCTCAGTCAGCTA
R:
CTCGTTGGGATGGGCACTTC
Band lengths:
238-1002
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types