GgaINT0000836 @ galGal3
Intron Retention
Description
NA
Coordinates
chrE22C19W28_E50C23:840638-841302:-
Coord C1 exon
chrE22C19W28_E50C23:841165-841302
Coord A exon
chrE22C19W28_E50C23:840739-841164
Coord C2 exon
chrE22C19W28_E50C23:840638-840738
Length
426 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
GATCTGTCCCTCTGCTGCAGGAG
3' ss Score
9.27
Exon sequences
Seq C1 exon
GTTTTGGCTCTCGTTTTTGTTCGGAAAGTCCTGGATGTCTGCTTCTCGAAGCGAGAGCTCAGCTGGCTGGATGACCTCATGCCAGAAAGCAAGAAGAAGAAGTTGGACGATGCCAAAAATGAAGCCAAAGAAGAAGAG
Seq A exon
GTAACACTACTGGGTGCCTGGCTGTGGGGCTGTGGAATTTCTACCACAGCCAGTCATTAAATGGTGTGGGGAGGCTGGGACTAGGCAGAAGGAGATCCCAATGGCCTGGATCCCACATCACAACCATTTTTTTTTTACCCTAAATTATCACTCGAACAGACATACAATAAGCTTAACTGTTGAACAATCATACAATTTTAAAATGCCTTCTAAAAGAAAGTTGTTTTATTATTGTCGTTACTTTTATCATTGTGATTGGAAAGATTTGCTCATGATGGGTCTTTAAACCCCCAAAATGTTTGGAGTGAAAGGTTTTCTTCCTGCTCCATCAGTTCTAAAGCTGCCAACGACCAGGAGGGGCAGCATGCAATGGCTGTGTGGGGTTTTTCCTCAAAGACAGGGAGTTGATCTGTCCCTCTGCTGCAG
Seq C2 exon
GAGTCTCAGCAGATGATGGAAGCTGCTGCTGCAAACTCAGTCCAGCTGAGCCTGGGGAAGACGAGCTACGTGGGTGTCCCCAAGCAGAACAGCAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423:ENSGALT00000013720:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=NA C2=0.324
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTGGCTCTCGTTTTTGTTCG
R:
TGTCCTTGCTGTTCTGCTTGG
Band lengths:
238-664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]