MmuINT0147266 @ mm10
Intron Retention
Gene
ENSMUSG00000023032 | Slc4a8
Description
solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Coordinates
chr15:100811543-100813198:+
Coord C1 exon
chr15:100811543-100811674
Coord A exon
chr15:100811675-100813106
Coord C2 exon
chr15:100813107-100813198
Length
1432 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGAG
5' ss Score
4.86
3' ss Seq
ATGCCCCCCCCTTCTTCCAGGAG
3' ss Score
10.97
Exon sequences
Seq C1 exon
GTGCTGGCCTTGGTCTTCGTCAGGAAAGTCATGGATCTCTGCTTCTCCAAGCGTGAGCTAAGCTGGCTGGACGACCTCATGCCTGAGAGCAAAAAGAAGAAGCTGGACGATGCGAAGAAGAAGGAGGAGGAG
Seq A exon
GTAGAGTCTGGTCTGGCTCCCGCCTTGTAGTTCAGGGTCTCTTTAGAGGGAGGGCAGGCTGGGTGGGAAGGGGGCAGGCGTGTCTGGGATCCCGAGGGTCGCACTGAGGGCTTCTTTCCTTCGGGAGGCTCCGACTTGTTGAGAGTATAAAATCCATCATTTCTGAGAGGGTTGGTTGTGCACCTGTTGCGGATGGTGCTGTGGCTGGCTTCATGCAAACACAGCTTGCACAGGACTTTCTGTCCTTCACCGCCCTCAGCAGTTGGCCTGGAGCCTATGGCCTGAGTGTGCACAGAAAGGCCATGCAGCAAGATGAAAACCCCAGGCCAAGAAGAAAGGGCTGGGAGTGTCCCGAGGCAGCTGCTGCCTGAAGAGCGGCCTTCCAGCTCTCTCAGTACTGGCAGGGTTTATGTCAGCTCGATAAAATCTAGAGTCATCAGAGAGAAATAAGCCTCAGTTGAGGAAATGCCTCTAAGAGATCTAGCTATAGGGCAGTTTCTCAATTGTGGAAGAGGGCCCAGCCCATTGTGGGCGGTGCCTTCCCTGGGCTGCTGGTACTGGGTTCTATGAGCAAGCCATGGGGAGCAAGGCAGTAAGCAGCATCCATCCCTCCATGGCCTCTGCATCAGCCGCTGCCTCCAGGTTCCTGCCCAGTTTAAGCTCCTTCCTTGACTTCCTTCAGTGATGAACAGCAGTGTGGAAGTGTAAGCCAAATAAACCCTTTCCTCCCCAACTTGCTTTTTGTTCATGGTGTTTTATCGCCATGATAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCATACACACACACACACACACACACACACACGGCCTCCTTGTCGTCAGGTAGTCCTAACATTCTTTTTTGGCAACACTGGCATGTTCTTGTGCCCCGTGTTCCTGTACCTGGTCGTTGGCTCTAAGGATGCCCTCACATTTGGGTTCTTACCGTTTCTCAGTGCTGTTCCATTCTGTTATTTGAGGCCTTGAGCCCATGGAAGGGACCTAATTATATGAGTGGGAATGAAAACTGCCTGACACCTTGGTGGTAAAAACTAGGCGGGAAGACTCTTGGTTTACTTGGTAGAAGATATAGTTGTAAGCCAGGGTGCAGTAAAGAAACCACCAAAATGGTCACTCTGAAGAGGCCAGAGCCGAGAGAAAAGGGAAACCTTGCTGTAACTCAGAGCAGGTGCCTGTGGGGAGGGAAGCCTGGGCGCTAGCATCCACAGGTGTACCCACTGGAAACGGCCTCCTCAGGGCTGAGGTGTTCTGGAAACGCTGTCTGTGGGCTTTTAGCAATCCTTGTATAGTCCAGCTTGAGCTTGTTTCTAGACACATGCTCTCTCCTTTGGAATTTGGGGATAGGAGTTTCCTTTGGACCTGATGATGCCCCCCCCTTCTTCCAG
Seq C2 exon
GAGGCCGAGAAGATGTTGGACATTGGGGGTGACAAGTTTCCCCTGGAAAGCAGGAAGCTGCTAAGTAGTCCTGGCAAGAGCAGCAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023032:ENSMUST00000023776:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCTTGGTCTTCGTCAG
R:
CTGCTGCTCTTGCCAGGACTA
Band lengths:
215-1647
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types